Locus 12492

Sequence ID dm3.chrX
Location 573,934 – 574,024
Length 90
Max. P 0.560906
window17180

overview

Window 0

Location 573,934 – 574,024
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 89.81
Shannon entropy 0.16855
G+C content 0.53642
Mean single sequence MFE -23.20
Consensus MFE -19.52
Energy contribution -20.53
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.14
SVM RNA-class probability 0.560906
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 573934 90 - 22422827
UGGAAACUAAGCCAAUGACAGAUGCUGUCGCUCUGGCUGUCUCAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUUCCUUCGG
.(((((...(((((.((((((...))))))...)))))........................((((((......)))))))))))..... ( -25.00, z-score =  -2.33, R)
>droSim1.chrX 458848 90 - 17042790
UGGAAACUAAGCCAAUGACAGAUGCUGUCGCUCUGGCUGUCUCAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUGCCUCCGG
.(((.....(((((.((((((...))))))...))))).......................(((((((......)))))))....))).. ( -24.40, z-score =  -1.81, R)
>droSec1.super_10 421403 90 - 3036183
UGGAAACUAAGCCAAUGACAGAUGCUGUCGCUCUGGCUGUCUCAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUGCCUCCGG
.(((.....(((((.((((((...))))))...))))).......................(((((((......)))))))....))).. ( -24.40, z-score =  -1.81, R)
>droYak2.chrX 494361 81 - 21770863
UGGAAGCCAAGCCAAUGACAGAUGCUGUCGCUCUGGCUGUCGCAACUGUCUCUCCACUUUCAUUCCGGAACCCCCCAGCCA---------
.((((...(((.....(((((.(((.(..((....))..).))).)))))......)))...))))((......)).....--------- ( -19.00, z-score =  -0.01, R)
>consensus
UGGAAACUAAGCCAAUGACAGAUGCUGUCGCUCUGGCUGUCUCAACUGUCUCUCCAUUUUCAUUCCGGAACCCCCCGGAAUUGCCUCCGG
((((.....(((((.((((((...))))))...)))))(.(......).)..)))).....(((((((......)))))))......... (-19.52 = -20.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:20 2011