| Sequence ID | dm3.chrX |
|---|---|
| Location | 530,071 – 530,173 |
| Length | 102 |
| Max. P | 0.797580 |
| Location | 530,071 – 530,173 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 96.07 |
| Shannon entropy | 0.06419 |
| G+C content | 0.56510 |
| Mean single sequence MFE | -34.38 |
| Consensus MFE | -33.10 |
| Energy contribution | -33.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 530071 102 + 22422827 UACUGAGAUACGGGGCCCUCAGGCAGAGAAAGAGGGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUC ...((((....(..((((((...........))))((....))..))..)..(((((((((.((....)).))))))))))))).................. ( -36.10, z-score = -2.07, R) >droSim1.chrX 413311 100 + 17042790 UACUGAGAUACGGGGCCCUCAGGCAGAGAAAG--GGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCAUAUAUAUAUAAAUC ..(((((..........)))))((.(((....--.((....)).........(((((((((.((....)).))))))))))))..))............... ( -34.60, z-score = -1.67, R) >droSec1.super_10 376437 100 + 3036183 UACUGAGAUACGGGGCCCUCAGGCAGAGAAAG--GGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCAUAUAUAUAUAAAUC ..(((((..........)))))((.(((....--.((....)).........(((((((((.((....)).))))))))))))..))............... ( -34.60, z-score = -1.67, R) >droYak2.chrX 451263 102 + 21770863 UACUGAGAUACGGGGCCCGCAGGCAGAGAGAGAGGGCGAGAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUC ...........(.((((....)))...(((((...((....))...))....(((((((((.((....)).)))))))))))).).)............... ( -33.00, z-score = -0.71, R) >droEre2.scaffold_4644 485313 102 + 2521924 UACUGAUAUACGGGGCCCGCAGGCAGAGAGAGAGGGCGAGAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUC .....(((((.(..(((....)))...(((((...((....))...))....(((((((((.((....)).)))))))))))).....).)))))....... ( -33.60, z-score = -0.92, R) >consensus UACUGAGAUACGGGGCCCUCAGGCAGAGAAAGAGGGCGAAAGCAAGCUACAAGCGGGUGCGAGCGAGAGCGCGCGCUUGCCUCACGCACAUAUAUAUAAAUC ...........(.((((....))).(((..((...((....))...))....(((((((((.((....)).)))))))))))).).)............... (-33.10 = -33.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:14 2011