Locus 12485

Sequence ID dm3.chrX
Location 518,842 – 518,908
Length 66
Max. P 0.651414
window17168

overview

Window 8

Location 518,842 – 518,908
Length 66
Sequences 6
Columns 68
Reading direction reverse
Mean pairwise identity 75.70
Shannon entropy 0.46999
G+C content 0.53075
Mean single sequence MFE -14.80
Consensus MFE -9.64
Energy contribution -10.42
Covariance contribution 0.78
Combinations/Pair 1.21
Mean z-score -1.01
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.651414
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 518842 66 - 22422827
UAGUCCGCAACCCACUGGAUUCUGGACGCUGAAUUG--CCAGCCGAAGCACACCCAUGUGGACCAUAA
..(((((((..(((........)))..((((.....--.)))).............)))))))..... ( -17.10, z-score =  -1.30, R)
>droAna3.scaffold_12929 425280 68 - 3277472
CAGUACGCAGCAUUUUCUUUCAUACAAGUCUAAACGAAACAACUGAAGCCAACCCAUGUGCACUAAAC
.(((.((((........(((((......((.....))......)))))........)))).))).... (  -7.59, z-score =  -0.14, R)
>droEre2.scaffold_4644 473240 66 - 2521924
UAAUCCGCAGCCCGUAACCCACUGGAUGCUGAAUUG--CCAGCCGAAGCACACCCAUGUGGACCAUAU
...((((((.((.((.....)).))..((((.....--.)))).............))))))...... ( -13.60, z-score =  -0.59, R)
>droYak2.chrX 439717 66 - 21770863
UAAUCCGGACCCCGUGACCCACUGGACGCUGAAUUG--CCAGCCGAAGCACACCCAUGUGGACCAUAA
...(((((...))).)).(((((((..((((.....--.)))).(.....)..))).))))....... ( -14.00, z-score =  -0.67, R)
>droSec1.super_10 365192 66 - 3036183
UAGUCCGCAACCCACUGGAUUCUGGACGCUGAAUUG--CCAGCCGAAGCACACCCAUGUGUACCACAA
..(((((.((((....)).)).)))))((((.....--.))))....(((((....)))))....... ( -16.00, z-score =  -1.15, R)
>droSim1.chrX 402134 66 - 17042790
UAGUCCGCAACCCACUGGAUGCUGGACGCUGAAUUG--CCAGCCGAAGCACACCCAUGUGGACCAUAA
..(((((((......(((.((((....((((.....--.))))...))))...))))))))))..... ( -20.50, z-score =  -2.21, R)
>consensus
UAGUCCGCAACCCACUGGAUACUGGACGCUGAAUUG__CCAGCCGAAGCACACCCAUGUGGACCAUAA
..(((((((..(((........)))..((((........)))).............)))))))..... ( -9.64 = -10.42 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:10 2011