| Sequence ID | dm3.chrX |
|---|---|
| Location | 489,394 – 489,532 |
| Length | 138 |
| Max. P | 0.671698 |
| Location | 489,394 – 489,492 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 93.20 |
| Shannon entropy | 0.09370 |
| G+C content | 0.42177 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -22.61 |
| Energy contribution | -22.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 489394 98 + 22422827 UUAGAAGACAUUUUAUGAAAUACAUUGCAAUAGGAAUAGAAAUGCAGAUAGGACGCGUUCCGAUUCUUUGGAAUGCUGCCUUCGCAGCACUAUAUCCA ................................(((((((...(((.((.(((..(((((((((....)))))))))..))))))))...)))).))). ( -27.10, z-score = -2.96, R) >droSec1.super_10 336142 98 + 3036183 UUAGAAGGCAUUAUUUGAAAUACAUGGCAAUAGGAAUAGAAAGGCAGCUAGGACGUGUCCCGAUUCUUCGGAAUGCUGCCUUCGCAGCACUAUCUCCA ........................(((..(((((....(((.((((((..(((....)))..((((....)))))))))))))....).))))..))) ( -26.90, z-score = -1.09, R) >droSim1.chrX 372644 98 + 17042790 UUAGAAGACAUUAUUUGAAAUACAUGGCAAUAGGAAUAGAAAGGCAGCUAGGACGUGUUCCGAUUCUUCGGAAUGCUGCCUUCGCAGCACUAUCUCCA ........................(((..(((((....(((.((((((........(((((((....))))))))))))))))....).))))..))) ( -26.60, z-score = -1.62, R) >consensus UUAGAAGACAUUAUUUGAAAUACAUGGCAAUAGGAAUAGAAAGGCAGCUAGGACGUGUUCCGAUUCUUCGGAAUGCUGCCUUCGCAGCACUAUCUCCA ................................(((((((....((....(((..(((((((((....)))))))))..)))..))....)))).))). (-22.61 = -22.50 + -0.11)
| Location | 489,434 – 489,532 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 92.49 |
| Shannon entropy | 0.10307 |
| G+C content | 0.47959 |
| Mean single sequence MFE | -30.43 |
| Consensus MFE | -24.64 |
| Energy contribution | -25.53 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 489434 98 - 22422827 CAAAAAGAAGCCCUUUAGUUCUUCCUAGCUUUCGAACUUUUGGAUAUAGUGCUGCGAAGGCAGCAUUCCAAAGAAUCGGAACGCGUCCUAUCUGCAUU ......((((..(....)..))))...((((((((..(((((((....(((((((....))))))))))))))..)))))).)).............. ( -30.60, z-score = -2.93, R) >droSec1.super_10 336182 97 - 3036183 CAAAAAG-AGCCCUUUAGUCCUUCGUAGCUCUCGUACUUUUGGAGAUAGUGCUGCGAAGGCAGCAUUCCGAAGAAUCGGGACACGUCCUAGCUGCCUU ....(((-..(......)..))).((((((.......(((((((....(((((((....))))))))))))))....((((....))))))))))... ( -30.80, z-score = -1.41, R) >droSim1.chrX 372684 97 - 17042790 CAAAAAG-AGCCCUUUAGUCCUUCGUAGCUCUCGAACUUUUGGAGAUAGUGCUGCGAAGGCAGCAUUCCGAAGAAUCGGAACACGUCCUAGCUGCCUU ....(((-..(......)..))).((((((...((..(((((((....(((((((....))))))))))))))..))(((.....))).))))))... ( -29.90, z-score = -1.55, R) >consensus CAAAAAG_AGCCCUUUAGUCCUUCGUAGCUCUCGAACUUUUGGAGAUAGUGCUGCGAAGGCAGCAUUCCGAAGAAUCGGAACACGUCCUAGCUGCCUU ........................(((((((((((..(((((((....(((((((....))))))))))))))..))))).........))))))... (-24.64 = -25.53 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:07 2011