| Sequence ID | dm3.chrX |
|---|---|
| Location | 474,038 – 474,090 |
| Length | 52 |
| Max. P | 0.894616 |
| Location | 474,038 – 474,090 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 78.57 |
| Shannon entropy | 0.36464 |
| G+C content | 0.47457 |
| Mean single sequence MFE | -13.85 |
| Consensus MFE | -8.49 |
| Energy contribution | -8.88 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.894616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 474038 52 + 22422827 UUGGGAAACUUUCCAAAGUGCAUUCUACAUGCCCAAGAGUGCCCCCUACUCA------------ ..(((..((((....))))(((((((.........))))))).)))......------------ ( -11.90, z-score = -1.54, R) >droAna3.scaffold_12929 370453 64 + 3277472 UUGUGAAACUUUCCAAAGUGCAUUCUGCAUUCUGAAGUAUCUCUCUCUAUAUCUGCUCCCCACA ..(.((.((((..((.(((((.....))))).)))))).)).)..................... ( -8.20, z-score = -1.15, R) >droEre2.scaffold_4644 421590 51 + 2521924 UUGGGAAACUUUCCAAAGUGCAUUCUGCAUUCCCAAGAG-GCACUGUUCUCA------------ (((((((((((....))))((.....)).)))))))(((-(......)))).------------ ( -13.60, z-score = -1.40, R) >droYak2.chrX 393520 52 + 21770863 UUGGGAAACUUUCCAAAGUGCAUUCUGCAGUGCCAAGAGUGCCCCGCACUCA------------ ((((((....)))))).(.((((......)))))..((((((...)))))).------------ ( -16.00, z-score = -1.66, R) >droSec1.super_10 321110 51 + 3036183 UUGGGAAACUUUCCAAAGUGCAUUCUGCAUUCCCAAGAGUGCCCCC-ACUCA------------ (((((((((((....))))((.....)).)))))))(((((....)-)))).------------ ( -16.70, z-score = -3.33, R) >droSim1.chrX 357506 52 + 17042790 UUGGGAAACUUUCCAAAGUGCAUUCUGCAUUCCCAAGAGUGCCCCCCACUCA------------ (((((((((((....))))((.....)).)))))))(((((.....))))).------------ ( -16.70, z-score = -3.37, R) >consensus UUGGGAAACUUUCCAAAGUGCAUUCUGCAUUCCCAAGAGUGCCCCCCACUCA____________ ((((((....))))))...(((((((.........)))))))...................... ( -8.49 = -8.88 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:04 2011