| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,446,831 – 9,446,923 |
| Length | 92 |
| Max. P | 0.977125 |
| Location | 9,446,831 – 9,446,923 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.07 |
| Shannon entropy | 0.24268 |
| G+C content | 0.38704 |
| Mean single sequence MFE | -29.88 |
| Consensus MFE | -22.32 |
| Energy contribution | -22.28 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.977125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9446831 92 + 23011544 AAGUGUGAAUGUGCAUGCAU-------UGGGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGAUUAAAAACAUUU ((((((.(((.((..(((((-------...))))).(((((((((((((((((((....))))))))))))....))).)))))).)))....)))))) ( -25.30, z-score = -1.76, R) >droSim1.chr2L 9223408 99 + 22036055 AAGUGUGAAUGUGCAUGUGUGUGUACUUGGUUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGCUUAAAAGCAUUU ((((((....((((((....))))))..(((((...(((((((((((((((((((....))))))))))))....))).))))))))).....)))))) ( -30.40, z-score = -2.28, R) >droSec1.super_3 4900658 99 + 7220098 AAGUGUGAAUGUGCACAUGUGUGUACUUGGUUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGAUUAAAAGCAUUU ((((((....((((((....))))))((((((....(((((((((((((((((((....))))))))))))....))).))))..))))))..)))))) ( -31.30, z-score = -2.86, R) >droYak2.chr2L 12120091 99 + 22324452 AUGUGUGAAUGUGCAUGGGUACGCCUGUGUAUGUAAGCUGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUAAAGCGUUGCCAGAAUAAAAGCAUGU ((((((..(((((((((((....)))))))))))...(((((.((((((((((((....))))))))))))..........))))).......)))))) ( -34.50, z-score = -4.38, R) >droEre2.scaffold_4929 10056551 99 + 26641161 AAGUGUGAAUGUGCAUGUGUGUACUUGUGUGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCGAGCGUUGCCAGAGUAAAAGCAUUU ((((((.....(((...((..(((....)))..)).(((((((((((((((((((....)))))))))))....)))).))))....)))...)))))) ( -27.90, z-score = -2.06, R) >consensus AAGUGUGAAUGUGCAUGUGUGUGCACGUGGGUGUAAGCAGGCUCUUAAGUUUCUUUUAAGAGAGACUUGAGUUCAAGCAUUGCCAGAUUAAAAGCAUUU ((((((.....(((((.((........)).))))).(((((((((((((((((((....))))))))))))....))).))))..........)))))) (-22.32 = -22.28 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:19 2011