| Sequence ID | dm3.chrX |
|---|---|
| Location | 462,322 – 462,430 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 462,322 – 462,430 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.44402 |
| G+C content | 0.39326 |
| Mean single sequence MFE | -28.83 |
| Consensus MFE | -9.93 |
| Energy contribution | -11.27 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 462322 108 - 22422827 UGAAAAAGUUGCUCGCGCUU-UUAAUUGUUA---AAACGAUUGGAUAUGCCGCGCAGACCUUUUGAGUAU------AUAUUGUUAUCCAAUUUGCUGUACGAAUUGGAUUUCCCACCA ...(((((((((.((.((.(-((((((((..---..)))))))))...)))).))))..)))))......------.....(..((((((((((.....))))))))))..)...... ( -26.30, z-score = -2.20, R) >droSim1.chrX 347233 108 - 17042790 UGAAAAAGUUGCUCGCUCUU-UUAAUUGUUA---AAACGAUUGGAUACGCUGCGCAGCCCUUUCGAGCAU------AUAUUGUUAUCCAAUUUGCUGUGCGAAUUGGAUUUCCCACCA .((((..(((((.(((...(-((((((((..---..)))))))))...)).).)))))..)))).((((.------....))))(((((((((((...)))))))))))......... ( -30.40, z-score = -2.94, R) >droSec1.super_10 309269 108 - 3036183 UGAAAAAGUUGCUCGCUCUU-UUAAUUGUUA---AAACGAUUGGAUACGCUGCGCAGCCCUUUCGAGUAU------AUAUUGUUAUCCAAUUUGCUGUGCGAAUUGGAUUUCCCACCA .((((..(((((.(((...(-((((((((..---..)))))))))...)).).)))))..))))......------.....(..(((((((((((...)))))))))))..)...... ( -29.80, z-score = -3.07, R) >droYak2.chrX 381423 108 - 21770863 UGAAAAAGUUGCUGGCGUUU-UUAAUUGUUU---AAACGAUUGGUUACGCCGCACAGCCCUUUGGAGUAC------AUAUUGUUAUCCAAUUUGCUGUGCGAAUUGCAUUUCCCACCA .((((....(((.(((((..-((((((((..---..))))))))..)))))(((((((...(((((..((------.....))..)))))...))))))).....)))))))...... ( -37.70, z-score = -4.73, R) >droEre2.scaffold_4644 406255 113 - 2521924 UGAAAAAGUUGCGCGCGAUU-UUAAUUGUUA---AAACGAUGUGUUACGCCGCACAGCCCGUGCGAGUACACGGGUAUAUUGUUAUCCAAUUUGCUGUACGAAUUGCAUUU-CCACCA .((((..((.(((.(((...-...(((((..---..)))))......)))))))).(((((((......)))))))...........(((((((.....)))))))..)))-)..... ( -28.40, z-score = -0.23, R) >droAna3.scaffold_12929 354864 102 - 3277472 AAAAAAUGUAUUUCGUCCUUGUUAAUUGCAGGACAAAUUGUGCGGUUGGUUGUCCACUUUUUGAAAGU--------AAAUUGUUAUCCAAUUUGUUGAAUCGGC--GAUUUA------ ........((..((((((((((.....)))))((((((((.((((((((....))((((.....))))--------.))))))....))))))))......)))--))..))------ ( -20.40, z-score = -0.73, R) >consensus UGAAAAAGUUGCUCGCGCUU_UUAAUUGUUA___AAACGAUUGGAUACGCCGCGCAGCCCUUUCGAGUAU______AUAUUGUUAUCCAAUUUGCUGUACGAAUUGGAUUUCCCACCA .........(((..(((....(((((((((.....)))))))))...))).)))..............................((((((((((.....))))))))))......... ( -9.93 = -11.27 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:04 2011