| Sequence ID | dm3.chrX |
|---|---|
| Location | 457,828 – 457,916 |
| Length | 88 |
| Max. P | 0.730997 |
| Location | 457,828 – 457,916 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 59.89 |
| Shannon entropy | 0.72083 |
| G+C content | 0.46544 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.16 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 457828 88 + 22422827 UUAAGGGAAGUGCUAAGCGCCUCUCUCUGCGCUUCUCAAGUUGCCCUGUUAA-GUUUCAACUCA-GCCGAUUACAGACCAACUAGCACUU--- .......(((((((((((((........))))))....(((((..((((...-(((.......)-)).....))))..))))))))))))--- ( -23.00, z-score = -1.21, R) >droSim1.chrX 344258 88 + 17042790 UUAAGGGAAGUGUUGAGCGCCUCUCUCUGCACUUCUCACGUUGCCCUCCUAA-GUUUCAACUCA-GCCGAUUGCAGGCCAACUUAGUCUU--- ....(((((((((.(((.......))).)))))))))...........((((-(((........-(((.......))).)))))))....--- ( -23.00, z-score = -0.99, R) >droSec1.super_10 306467 88 + 3036183 UUAAGGGAAGUGUUGAGCGCCUCUCUCUGCACUUCUCACGUUGCCCUCCUAA-GUUUUAACUCA-GCCGAUUGCAGGCCAACUUAGACUU--- ....(((((((((.(((.......))).)))))))))...........((((-(((........-(((.......))).)))))))....--- ( -23.50, z-score = -1.06, R) >droEre2.scaffold_4690 10574910 78 - 18748788 UUAAGAAAAAUGUGGAGCGCCUUCCUCCGCGCUUCUCAACAUCCAUACUUAA-GG---GGCUUA-UAUUGCAUAUGGUUGAUU---------- ..........((.(((((((........))))))).)).((.(((((((...-.)---)((...-....)).))))).))...---------- ( -18.70, z-score = -0.90, R) >droPer1.super_60 263260 89 - 401158 -CAUGCCAGCUAUUUAGCCAAAUUCGAUGCGCUAAUUA---UACGCUGUCAGCGUCUCAAUUCAAUCCGAUUGAGAGCAAACUCGUGCUCAUU -..((.((((((((((((((.......)).)))))..)---)).)))).))((.((((((((......))))))))))............... ( -21.10, z-score = -1.34, R) >consensus UUAAGGGAAGUGUUGAGCGCCUCUCUCUGCGCUUCUCAAGUUGCCCUCUUAA_GUUUCAACUCA_GCCGAUUGCAGGCCAACUUAGACUU___ ....(((((((((.(((.......))).)))))))))........................................................ ( -8.44 = -9.16 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:03 2011