| Sequence ID | dm3.chrX |
|---|---|
| Location | 439,197 – 439,304 |
| Length | 107 |
| Max. P | 0.505541 |
| Location | 439,197 – 439,304 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.02 |
| Shannon entropy | 0.45659 |
| G+C content | 0.39073 |
| Mean single sequence MFE | -27.15 |
| Consensus MFE | -12.45 |
| Energy contribution | -13.58 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 439197 107 - 22422827 CUUUACCUUAAAUUUCCCUCUUGCUUCUUUAUAAAGUAAUGCCAUUAUGAAA-----CUAGUGGCAUGUUCUAAAUAGA-UUCUGAAGCAAUGCAAGAUUCA--CUUAGCCUUUC ....................((((((((((((..((..(((((((((.....-----.)))))))))...))..)))))-....))))))).(((((.....--))).))..... ( -21.50, z-score = -2.07, R) >droSim1.chrX 331642 107 - 17042790 UUGUAACUUACAUUUUCCUCGUGCUUCUUCAUGAAGCAAUGCCAUUAUGAAA-----CUAGUGGCAUGUUCCAAAUGGA-UUCUGGAGCAAUGCAAGAUUUA--CUUAGCCCUUC ..(((((((.((((((((...((((((.....))))))(((((((((.....-----.)))))))))..(((....)))-....)))).)))).)))..)))--).......... ( -29.00, z-score = -2.67, R) >droSec1.super_10 295458 107 - 3036183 UUGUAACUUACAUUUUCCUUGUGCUUCUUCAUGAAGCAAUGCCAUUAUGAAA-----CUAGUGGCAUGUUCCAAAUGGA-UUCUGGAGCAAGGCAAGAUUUA--CUUAGCCCUUC ..((((.....(((((((((.((((((.....))))))(((((((((.....-----.)))))))))((((((......-...)))))))))).))))))))--).......... ( -30.10, z-score = -2.40, R) >droAna3.scaffold_12929 335306 111 - 3277472 CUUUGCCAUUCAUAUCCUUGCUGCUGAUUUCUUGGGCAAUGCCAUUAUAAAAUGUGGUUGGAGCGAAGUGCUAAAUGGAUUUUUUUUUUGGGGCGAGGGCGAGGCUUUGUC---- (((((((.(((......((((((((.(.....).)))...(((((........)))))...))))).((.(((((...........))))).)))))))))))).......---- ( -28.00, z-score = 0.47, R) >consensus CUGUAACUUACAUUUCCCUCGUGCUUCUUCAUGAAGCAAUGCCAUUAUGAAA_____CUAGUGGCAUGUUCCAAAUGGA_UUCUGGAGCAAGGCAAGAUUUA__CUUAGCCCUUC .....................((((((.....))))))(((((((((...........)))))))))((((((.(......).))))))..((((((.......))).))).... (-12.45 = -13.58 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:00 2011