| Sequence ID | dm3.chrX |
|---|---|
| Location | 436,133 – 436,228 |
| Length | 95 |
| Max. P | 0.789772 |
| Location | 436,133 – 436,228 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.24 |
| Shannon entropy | 0.46870 |
| G+C content | 0.61647 |
| Mean single sequence MFE | -27.26 |
| Consensus MFE | -19.26 |
| Energy contribution | -19.86 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 436133 95 - 22422827 -------CAACAGUCAACCCC-CCAC--CCACCCCCGCUAUCGGCCAGAGGCAGCUCGACACAUGCGAAAAGCGUGGUGAAAUCUGCCGCCGGCAUCGAGAACCU -------..............-....--............((((((.(.(((((.(((...(((((.....))))).)))...))))).).)))..)))...... ( -24.00, z-score = -0.36, R) >droSec1.super_10 292200 95 - 3036183 -------CAACAGGCUAGCCC-CCAC--CCACCCCCGCUAUCGGCCGGAGGCAGCUCGACACAUGCGAAAAGCGUGGUGAAAUCUGCCGCCGGCAUCGAGAACCU -------....(((.((((..-....--........))))((((((((.(((((.(((...(((((.....))))).)))...))))).)))))..)))...))) ( -32.64, z-score = -1.34, R) >droYak2.chrX 363890 104 - 21770863 CAACAGGCAACAACCCCCACC-CAACCACCACCCCCUCUUUCUGCCACAGGCAGCUCGACACAUGCGAGAAGCGUGGUGAAAUCUGCCGCCGGCAUCGAGAACCU .....(....)..........-..............((((..((((...(((((.(((...(((((.....))))).)))...)))))...))))..)))).... ( -27.80, z-score = -1.72, R) >droEre2.scaffold_4644 391116 105 - 2521924 CUACUGGCACCACACCACCCCACCACCCCCGACCCGGCUUCCCGCCAGAGGCAGCUCGACACAUGCGAAAAGCGUGGUGAAAUCUGCCGCCGGCAUCGAGAACCU ...(((((...........................(((.....)))...(((((.(((...(((((.....))))).)))...))))))))))............ ( -29.90, z-score = -1.18, R) >dp4.chrXL_group1e 167521 76 - 12523060 --------------------------AACCAAACACACGUUUCUC---GGGCAGCACGACACAUGCGAUGAGCGUGGUGAAAUCUGCCGCCGGCAUCGAGAACCU --------------------------............(.(((((---((((((.......(((((.....))))).......)))))(....)..)))))).). ( -21.94, z-score = -0.52, R) >consensus _______CAACAG_CCACCCC_CCAC__CCACCCCCGCUUUCCGCCAGAGGCAGCUCGACACAUGCGAAAAGCGUGGUGAAAUCUGCCGCCGGCAUCGAGAACCU ...........................................(((...(((((.(((...(((((.....))))).)))...)))))...)))........... (-19.26 = -19.86 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:03:00 2011