| Sequence ID | dm3.chrX |
|---|---|
| Location | 430,813 – 430,906 |
| Length | 93 |
| Max. P | 0.859939 |
| Location | 430,813 – 430,906 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 70.82 |
| Shannon entropy | 0.41378 |
| G+C content | 0.52424 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -21.82 |
| Energy contribution | -21.70 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 430813 93 + 22422827 UUGGGUUAGGUCUGCAAUUCUGAUUCGCUACCAUACGAAGGGAA-UAAAGCCCGACUCGGGUUGUGUUGACUUGACUUGACUCGUUCCACUUGA (..(((((((((.((((((((..((((........)))).))))-)..((((((...)))))).))).)))))))))..).............. ( -29.00, z-score = -1.91, R) >droYak2.chrX 357099 94 + 21770863 UUGGGUUAGGUCUGCAAUCCCGAUUCGCUGCCAAAAGAAAGGGAGUACGAGUAAAGCCUGCCUGAGUCGGGUUGACUUGGCUUGUUCCACUCGA .(((..((((((..(((.(((((((((((.((........)).)))....(((.....)))..)))))))))))....))))))..)))..... ( -31.00, z-score = -0.89, R) >droEre2.scaffold_4644 382448 83 + 2521924 UUGGGUUAGGUCUGCGCUCCCGAUUUGCCGCCAUACGAGGGGAA---CAGG--------GCCUGACUCGGGUUGACUUGACUUGUUCGACUCGA ..(((((((((((...((((((...((....))..)).))))..---..))--------)))))))))((((((((.......).))))))).. ( -31.20, z-score = -1.35, R) >consensus UUGGGUUAGGUCUGCAAUCCCGAUUCGCUGCCAUACGAAGGGAA_UACAGG___A__C_GCCUGAGUCGGGUUGACUUGACUUGUUCCACUCGA ..((((((((((......((((((((....((........))......(((((.....)))))))))))))..))))))))))........... (-21.82 = -21.70 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:58 2011