Locus 12470

Sequence ID dm3.chrX
Location 417,647 – 417,702
Length 55
Max. P 0.860803
window17147 window17148

overview

Window 7

Location 417,647 – 417,702
Length 55
Sequences 5
Columns 55
Reading direction forward
Mean pairwise identity 95.45
Shannon entropy 0.08196
G+C content 0.31636
Mean single sequence MFE -11.32
Consensus MFE -9.28
Energy contribution -9.28
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.50
SVM RNA-class probability 0.722147
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 417647 55 + 22422827
GUGGUUUAUGCUGUAUUCAAAGUUUUUCAUGCUUUUUGAUACAAAUUCAACCGAU
.(((((.....((((((.(((((.......)))))..)))))).....))))).. ( -10.00, z-score =  -1.56, R)
>droSim1.chrX 311726 55 + 17042790
GUGGUUUAUGCUGUAUUCAAAGUUUUUCAUGCUUUUUGAUACAAAUUCAACCGAU
.(((((.....((((((.(((((.......)))))..)))))).....))))).. ( -10.00, z-score =  -1.56, R)
>droSec1.super_10 273867 55 + 3036183
GUGGUUUAUGCUGUAUUCAAAGUUUUUCAUGCUUUUUGAUACAAAUUCAACCGAU
.(((((.....((((((.(((((.......)))))..)))))).....))))).. ( -10.00, z-score =  -1.56, R)
>droYak2.chrX 344785 55 + 21770863
GUGGUUUAUGCUGUAUUCAAAGUUUUUUAUGCUUUGCGAUACAAAUACAACCGAU
.((((((((..((((((((((((.......)))))).)))))).))).))))).. ( -14.80, z-score =  -3.23, R)
>droEre2.scaffold_4644 369102 55 + 2521924
GUGGUUUAUGCUGUAUUAAAAGUUUUUCAUGCUUUUCGAUACAAAUCCAACCGAU
.(((((.....((((((((((((.......)))))).)))))).....))))).. ( -11.80, z-score =  -2.62, R)
>consensus
GUGGUUUAUGCUGUAUUCAAAGUUUUUCAUGCUUUUUGAUACAAAUUCAACCGAU
.(((((.....((((((.(((((.......)))))..)))))).....))))).. ( -9.28 =  -9.28 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 417,647 – 417,702
Length 55
Sequences 5
Columns 55
Reading direction reverse
Mean pairwise identity 95.45
Shannon entropy 0.08196
G+C content 0.31636
Mean single sequence MFE -9.77
Consensus MFE -8.66
Energy contribution -8.66
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.95
SVM RNA-class probability 0.860803
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 417647 55 - 22422827
AUCGGUUGAAUUUGUAUCAAAAAGCAUGAAAAACUUUGAAUACAGCAUAAACCAC
...((((....((((((((((.............)))).))))))....)))).. (  -9.32, z-score =  -1.85, R)
>droSim1.chrX 311726 55 - 17042790
AUCGGUUGAAUUUGUAUCAAAAAGCAUGAAAAACUUUGAAUACAGCAUAAACCAC
...((((....((((((((((.............)))).))))))....)))).. (  -9.32, z-score =  -1.85, R)
>droSec1.super_10 273867 55 - 3036183
AUCGGUUGAAUUUGUAUCAAAAAGCAUGAAAAACUUUGAAUACAGCAUAAACCAC
...((((....((((((((((.............)))).))))))....)))).. (  -9.32, z-score =  -1.85, R)
>droYak2.chrX 344785 55 - 21770863
AUCGGUUGUAUUUGUAUCGCAAAGCAUAAAAAACUUUGAAUACAGCAUAAACCAC
...((((....((((((..(((((.........))))).))))))....)))).. ( -11.40, z-score =  -2.54, R)
>droEre2.scaffold_4644 369102 55 - 2521924
AUCGGUUGGAUUUGUAUCGAAAAGCAUGAAAAACUUUUAAUACAGCAUAAACCAC
...((((....((((((..(((((.........))))).))))))....)))).. (  -9.50, z-score =  -1.75, R)
>consensus
AUCGGUUGAAUUUGUAUCAAAAAGCAUGAAAAACUUUGAAUACAGCAUAAACCAC
...((((....((((((...((((.........))))..))))))....)))).. ( -8.66 =  -8.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:54 2011