Locus 1247

Sequence ID dm3.chr2L
Location 9,445,139 – 9,445,239
Length 100
Max. P 0.683620
window1700

overview

Window 0

Location 9,445,139 – 9,445,239
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.26
Shannon entropy 0.21014
G+C content 0.56057
Mean single sequence MFE -33.12
Consensus MFE -25.66
Energy contribution -27.56
Covariance contribution 1.90
Combinations/Pair 1.00
Mean z-score -1.81
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.41
SVM RNA-class probability 0.683620
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 9445139 100 - 23011544
CUUCUCUGCAAAUGGACAGAGAGUCAUCCGCCGGCAAUUUGGAACGAUUCCAGUGGACUCCGGGCUCCCAUGUCUGGUGUCCAAUUAUCCUCCCUGCUCC
.(((((((........)))))))......((.((....(((((.....)))))(((((.((((((......)))))).))))).........)).))... ( -32.90, z-score =  -1.58, R)
>droEre2.scaffold_4929 10054792 82 - 26641161
CUUUCCUGCAAAUGGAC--GAAGUCAUGCGCCGGCAAUUUGGAACGAUUCCAGUGGA----------------CUGGUGUCCAAUUGUCCGCCCUGCUCC
.......(((..(((((--((......((((((((...(((((.....)))))..).----------------)))))))....)))))))...)))... ( -24.80, z-score =  -0.94, R)
>droYak2.chr2L 12118397 98 - 22324452
UUCCUCUGCAAAUGGAC--GGAGUCAUGCGCCGGCAAUUUGGAACGAUUCCAGUGGACUCCGGGCUCCCAUGUCUGGUGUCCAAUUGUCCUCCCUGCUCC
.......(((...((((--((((((.....((((....))))...))))))..(((((.((((((......)))))).)))))...))))....)))... ( -36.90, z-score =  -2.41, R)
>droSec1.super_3 4899042 98 - 7220098
CUUCUCUACAAAUGGAC--GGAGUCAUGCGCCGGCAAUUUGGAACGAUUCCAGUGGACUCCGGGCUGCCAUGUCUGGUGUCCAAUUGUCCUCCCUGCUCC
.............((((--((((((.....((((....))))...))))))..(((((.((((((......)))))).)))))...)))).......... ( -34.10, z-score =  -1.78, R)
>droSim1.chr2L 9221829 98 - 22036055
CUUCUCUGCAAAUGGAC--GGAGUCAUGCGCCGGCAAUUUGGAACGAUUCCAGUGGACUCCGGGCUGCCAUGUCUGGUGUCCAAUUGUCCUCCCUGCUCC
.......(((...((((--((((((.....((((....))))...))))))..(((((.((((((......)))))).)))))...))))....)))... ( -36.90, z-score =  -2.31, R)
>consensus
CUUCUCUGCAAAUGGAC__GGAGUCAUGCGCCGGCAAUUUGGAACGAUUCCAGUGGACUCCGGGCUCCCAUGUCUGGUGUCCAAUUGUCCUCCCUGCUCC
.......(((...((((..((((((.....((((....))))...))))))..(((((.((((((......)))))).)))))...))))....)))... (-25.66 = -27.56 +   1.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:18 2011