| Sequence ID | dm3.chrX |
|---|---|
| Location | 415,820 – 415,882 |
| Length | 62 |
| Max. P | 0.956439 |
| Location | 415,820 – 415,882 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 95.19 |
| Shannon entropy | 0.08417 |
| G+C content | 0.48228 |
| Mean single sequence MFE | -16.02 |
| Consensus MFE | -14.32 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 415820 62 - 22422827 -UGGGGUAAAAUCGAUAAUAUCGAUUGGCGAUAACAAUCGCACGCACACACACAGGCCCGCAA -((((((..(((((((...))))))).(((((....)))))..............)))).)). ( -17.50, z-score = -2.76, R) >droEre2.scaffold_4644 367223 62 - 2521924 -UGGGGAAAAAUCGAUAAUAUCGAUUGGCGAUAACAAUCGCACGCACACACACAGGCCCGCAA -.(((....(((((((...))))))).(((((....)))))...............))).... ( -15.70, z-score = -2.36, R) >droYak2.chrX 343266 63 - 21770863 UGGGGGAAAAAUCGAUAAUAUCGAUUGGCGAUAACAAUCGCACGCACACACACUGGCCCGCAA ((.(((...(((((((...))))))).(((((....)))))...............))).)). ( -17.90, z-score = -2.69, R) >droSec1.super_10 272036 62 - 3036183 -UGGGAAAAAAUCGAUAAUAUCGAUUGGCGAUAACAAUCGCACGCACACACACAGGCCCGCAA -.(((....(((((((...))))))).(((((....)))))...............))).... ( -15.50, z-score = -2.58, R) >droSim1.chrX 309905 62 - 17042790 -UCGGAAAAAAUCGAUAAUAUCGAUUGGCGAUAACAAUCGCACGCACACACACAGGCCCGCCA -.(((....(((((((...))))))).(((((....)))))................)))... ( -13.50, z-score = -1.64, R) >consensus _UGGGGAAAAAUCGAUAAUAUCGAUUGGCGAUAACAAUCGCACGCACACACACAGGCCCGCAA ..(((....(((((((...))))))).(((((....)))))...............))).... (-14.32 = -14.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:53 2011