Locus 12468

Sequence ID dm3.chrX
Location 413,652 – 413,766
Length 114
Max. P 0.868249
window17145

overview

Window 5

Location 413,652 – 413,766
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 90.83
Shannon entropy 0.12800
G+C content 0.34766
Mean single sequence MFE -20.53
Consensus MFE -19.55
Energy contribution -20.00
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.48
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.99
SVM RNA-class probability 0.868249
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 413652 114 - 22422827
GUAUAUUUAUGCUGUAAUAUCCUUUAAUUG------UCCCGGGUCACAUUUUUCCGUAUCCCCACGCCCUAAAGCAUUUUCGUAUCCAUUAAUUAAACAAGUAAAGGUGUAGGCUUAUAU
(((((.....(((...(((.((((((.(((------(...(((..((........))..)))...((......)).....................)))).))))))))).))).))))) ( -17.60, z-score =  -0.35, R)
>droSec1.super_10 269804 120 - 3036183
GCAUAUUUAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCCCGCCUUUAAGCAUUUUCGUAUACAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAU
.......((((((...(((.((((((((((..........((((.((........))))))....((......))......................))))))))))))).))))))... ( -22.00, z-score =  -2.00, R)
>droSim1.chrX 307681 120 - 17042790
GCAUAUUUAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCACGCCUUAAAGCAUUUUCGUAUUUAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAU
.......((((((...(((.((((((((((..........((((.((........))))))....((......))......................))))))))))))).))))))... ( -22.00, z-score =  -2.07, R)
>consensus
GCAUAUUUAUGCUGUAAUAUCCUUUAAUUGUCCAAGUCCCGGGUCACAUUUUUCCGUAUCCUCACGCCUUAAAGCAUUUUCGUAUACAUUAAUUAAUCAAUUAAAGGUGUAGGCAUAUAU
.......((((((...(((.((((((((((..........(((..((........))..)))...((......))......................))))))))))))).))))))... (-19.55 = -20.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:52 2011