| Sequence ID | dm3.chrX |
|---|---|
| Location | 337,044 – 337,098 |
| Length | 54 |
| Max. P | 0.906266 |
| Location | 337,044 – 337,098 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 96.30 |
| Shannon entropy | 0.05102 |
| G+C content | 0.58025 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -17.43 |
| Energy contribution | -17.77 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 337044 54 + 22422827 UGUCUGGUCACUGGCUUCUGGACCGGACAUCCGUCCAGAGGCCAAAGAAUCAGC ...((((((..((((((((((((.((....))))))))))))))..).))))). ( -28.70, z-score = -4.94, R) >droSec1.super_10 194764 54 + 3036183 UGUCUGGUCACCGACUUCUCGACCGGACAUCCGUCCAGAGGCCAAAGAAUCAGC ....(((((..(((....)))...((((....))))...))))).......... ( -13.70, z-score = -0.30, R) >droSim1.chrX 244143 54 + 17042790 UGUCUGGUCACCGGCUUCUCGACCGGACAUCCGUCCAGAGGCCAAAGAAUCAGC ...((((((...(((((((.(((.((....))))).)))))))...).))))). ( -20.00, z-score = -2.35, R) >consensus UGUCUGGUCACCGGCUUCUCGACCGGACAUCCGUCCAGAGGCCAAAGAAUCAGC ...((((((...(((((((.(((.((....))))).)))))))...).))))). (-17.43 = -17.77 + 0.33)
| Location | 337,044 – 337,098 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 96.30 |
| Shannon entropy | 0.05102 |
| G+C content | 0.58025 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -18.91 |
| Energy contribution | -18.47 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 337044 54 - 22422827 GCUGAUUCUUUGGCCUCUGGACGGAUGUCCGGUCCAGAAGCCAGUGACCAGACA .(((..((.(((((.(((((((((....)).))))))).))))).)).)))... ( -25.00, z-score = -3.44, R) >droSec1.super_10 194764 54 - 3036183 GCUGAUUCUUUGGCCUCUGGACGGAUGUCCGGUCGAGAAGUCGGUGACCAGACA (((((((..((((((...((((....))))))))))..)))))))......... ( -19.90, z-score = -1.29, R) >droSim1.chrX 244143 54 - 17042790 GCUGAUUCUUUGGCCUCUGGACGGAUGUCCGGUCGAGAAGCCGGUGACCAGACA .(((..((.(((((.(((.(((((....)).))).))).))))).)).)))... ( -19.80, z-score = -1.32, R) >consensus GCUGAUUCUUUGGCCUCUGGACGGAUGUCCGGUCGAGAAGCCGGUGACCAGACA .(((..((.(((((.(((.(((((....)).))).))).))))).)).)))... (-18.91 = -18.47 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:39 2011