| Sequence ID | dm3.chrX |
|---|---|
| Location | 332,904 – 333,016 |
| Length | 112 |
| Max. P | 0.643995 |
| Location | 332,904 – 333,016 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 94.55 |
| Shannon entropy | 0.09426 |
| G+C content | 0.44622 |
| Mean single sequence MFE | -30.35 |
| Consensus MFE | -25.50 |
| Energy contribution | -26.26 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 332904 112 + 22422827 AGCGAUCCUUUGGUGUGGGUGCUGAAGUCAAACAAAUUCAAAAUUUAUCACCCGUAACGAAAGGCACCGCACACUGCAUCGAAGGGAAAAGAAAAAACCGAUGAUGAGUUUG .(((..(((((.((..(((((.((((.................)))).)))))...)).)))))...)))..(((.(((((..((............))..))))))))... ( -28.73, z-score = -1.29, R) >droSim1.chrX 240102 112 + 17042790 AGCGAUCCUUUGGCGUGGGUGCUGAAGUCAAACAAAUUGAAAAUUUAUCACCCGUAGCGAAAGGCACCGCACACUGCAUCGAAGGGAAAAGAAAAAACCGAUGAUGAGUUUG .(((..(((((.((..(((((.((((.((((.....))))...)))).)))))...)).)))))...)))..(((.(((((..((............))..))))))))... ( -34.80, z-score = -2.83, R) >droSec1.super_10 190711 112 + 3036183 AGCGAUCCUUUGGCGUGGGUGCUGAAGUCAAACAAAUUGAAAAUUUAUCACCCGUAGCGAAAGGCACCGCACACUGCAUCGAAGGGAAAAGAAAAAACCGAUGAUGAGUUUG .(((..(((((.((..(((((.((((.((((.....))))...)))).)))))...)).)))))...)))..(((.(((((..((............))..))))))))... ( -34.80, z-score = -2.83, R) >droYak2.chrX 259612 111 + 21770863 AAUGAUCCUUUG-CGUGGGUGCUGAAGUCAAACAAAUUGAAAAUUUAUCACCCGUAGCGAAAGGCACCGCACACUGCAUCCGAGGAAAAGAAAAAAACCGAUGAUGAGUUUG ......((((((-(..(((((.((((.((((.....))))...)))).)))))...)).))))).....((.(((.((((...((............))...))))))).)) ( -25.30, z-score = -0.90, R) >droEre2.scaffold_4644 279025 111 + 2521924 AAGGAUCCUUUG-CGUGGGUGCUGAAGUCAAACAAAUUGAAAAUUUAUCACCCGUAGCGAAAGGCACCGCACACUGCAUCCGAGGAAAAAGAAAAAACCGAUGAUGAGUCUG ..((..((((((-(..(((((.((((.((((.....))))...)))).)))))...)).)))))..)).((.(((.((((...((............))...))))))).)) ( -28.10, z-score = -1.43, R) >consensus AGCGAUCCUUUGGCGUGGGUGCUGAAGUCAAACAAAUUGAAAAUUUAUCACCCGUAGCGAAAGGCACCGCACACUGCAUCGAAGGGAAAAGAAAAAACCGAUGAUGAGUUUG .(((..(((((.((..(((((.((((.((((.....))))...)))).)))))...)).)))))...)))..(((.((((...((............))...)))))))... (-25.50 = -26.26 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:38 2011