| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,417,570 – 9,417,672 |
| Length | 102 |
| Max. P | 0.935451 |
| Location | 9,417,570 – 9,417,672 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 73.05 |
| Shannon entropy | 0.49305 |
| G+C content | 0.46031 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -11.99 |
| Energy contribution | -12.22 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.935451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9417570 102 - 23011544 -------UACGCUUCCAAUUCCAAUUCCAAGCCAUGGUCAGCCGGUUU--GCCCGGCUAACCAGUCUUUUCCCAGCUAUUUUUAGUAACAAGCCACAAGCAAAACAAAAAA -------...((((..............(((...((((.((((((...--..)))))).))))..)))......((((....))))..........))))........... ( -22.40, z-score = -2.90, R) >droAna3.scaffold_12943 770138 90 - 5039921 ---------------------UAGCUUUGACCACUCAAAAGCCGGUUUCAUCUUGGGGAACCAGUCUUCGAAUAGGGGUUUUCCAUUACAGGUCGCCAACAACACAAAGAA ---------------------..(((((((....)).))))).(((..(....(((..((((...((......)).))))..)))......)..))).............. ( -19.10, z-score = 0.01, R) >droEre2.scaffold_4929 10026638 109 - 26641161 UACCACUCACACUCGCACAUCCAAUUCCAAGCCAUGGUCAGCCGGUUU--GCCCGGCGGAUCAGUCUUUUGCCAGCUAUUUUUAGUUACAAGCCACAACCAAAACAAAAAG ..............((............(((...(((((.(((((...--..))))).)))))..)))(((..(((((....))))).))))).................. ( -20.60, z-score = -1.16, R) >droYak2.chr2L 12090034 94 - 22324452 ---------------UACGUCCAAUUCCAAGCCAUGGUCAGCCGGUUU--GCCCGGCGGACCAGUCUUCGCUCACCUAUUUUUAGUUACAAGCCAGAGCAAAAACAAAAAA ---------------.............(((...(((((.(((((...--..))))).)))))..))).((((......................))))............ ( -22.45, z-score = -1.70, R) >droSec1.super_3 4871363 96 - 7220098 -------------UACACCUCCAAUUCCAAGCCAUGGUCAGCCGGUUU--GCCCGGCGAACCAGUCUUUUCCCAGCUAUUUUUAGUUACAAGCCACAACCAAAACAAAAAA -------------.................((..((((..(((((...--..)))))..))))..........(((((....)))))....)).................. ( -18.70, z-score = -2.01, R) >droSim1.chr2L 9193896 102 - 22036055 -------UACACCUCCAAUUCCAAUUCCAAGCCAUGGUCAGCCGGUUU--GCCCGGCGAACCAGUCUUUUCCCAGCUAUUUUUAGUUACAAGCCACAACCAAAACAAAAAA -------.......................((..((((..(((((...--..)))))..))))..........(((((....)))))....)).................. ( -18.70, z-score = -2.09, R) >consensus _____________U_CACUUCCAAUUCCAAGCCAUGGUCAGCCGGUUU__GCCCGGCGAACCAGUCUUUUCCCAGCUAUUUUUAGUUACAAGCCACAACCAAAACAAAAAA ..................................((((..(((((.......)))))..))))..........(((((....)))))........................ (-11.99 = -12.22 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:17 2011