| Sequence ID | dm3.chrX |
|---|---|
| Location | 289,194 – 289,248 |
| Length | 54 |
| Max. P | 0.862464 |
| Location | 289,194 – 289,248 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Shannon entropy | 0.11479 |
| G+C content | 0.46958 |
| Mean single sequence MFE | -14.87 |
| Consensus MFE | -10.10 |
| Energy contribution | -10.77 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 289194 54 + 22422827 UUACAAUUUACAGUCGCCGUUUAGCACGACACAGUGGCCAAUGGCAA--GUUACAA ...............((((((...(((......)))...))))))..--....... ( -10.80, z-score = -1.04, R) >droSim1.chrX 201478 56 + 17042790 UUACAAUUUACAGUCGGCGUUUAGCACGACACAGUGGCCACUGGCCACACUUACAA ............((((((.....)).))))...((((((...))))))........ ( -18.90, z-score = -4.38, R) >droSec1.super_10 150839 56 + 3036183 UUACAAUUUACAGUCGGCGUUUAGCACGACACACUGGCCACUGGCCACACUUACAA ............((((((.....)).))))....(((((...)))))......... ( -14.90, z-score = -3.27, R) >consensus UUACAAUUUACAGUCGGCGUUUAGCACGACACAGUGGCCACUGGCCACACUUACAA ............((((((.....)).))))....(((((...)))))......... (-10.10 = -10.77 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:36 2011