| Sequence ID | dm3.chrX |
|---|---|
| Location | 248,354 – 248,444 |
| Length | 90 |
| Max. P | 0.539757 |
| Location | 248,354 – 248,444 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 85.05 |
| Shannon entropy | 0.22764 |
| G+C content | 0.34111 |
| Mean single sequence MFE | -15.65 |
| Consensus MFE | -9.49 |
| Energy contribution | -10.30 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 248354 90 - 22422827 AACGAAAAACCCGUUGCUCAACUUC------UCUAACAUAAGCGG---UACACAGCAUUUUCCGUUUUGUGUUAUAUAUUUUUGUGUUUUUUUUUUUUU .(((((((....(((....)))...------..((((((((((((---.............))).)))))))))....))))))).............. ( -14.02, z-score = -1.45, R) >droSim1.chrX_random 737055 87 - 5698898 AACGAAAAACCCGUUGCUCAACUUC------UCUCACAUUAGCGG---CACACAGCAUUUUCCGUUUUGUGUUAUUUAUUUUUGUGUUUUUUUUUU--- .(((((((....((((((.......------.........)))))---)((((((.((.....)).))))))......)))))))...........--- ( -12.29, z-score = -0.85, R) >droYak2.chrX 179147 90 - 21770863 AACGAAAAACCCGUUGCUCAACUUC------UCUAACAUUAGCCGCCACACACAGCAUUUUCCGUUGUGUGUUACUCAUUUUU-UGUGCUUUCUUUU-- .((((((((...((.(((.......------.........))).)).(((((((((.......)))))))))......)))))-)))..........-- ( -17.19, z-score = -2.68, R) >droEre2.scaffold_4644 194486 94 - 2521924 AACGAAAAACCCGUUGCUCAACUUUAUAGAGUCUUACAUUAGCCA---CACACAGCAUUUUCCGUUGUGUGUUAUUUAUUUUU-UGUUUUUUUUUUUU- (((((((((...((.((((.........))))...)).......(---((((((((.......)))))))))......)))))-))))..........- ( -19.10, z-score = -3.88, R) >consensus AACGAAAAACCCGUUGCUCAACUUC______UCUAACAUUAGCCG___CACACAGCAUUUUCCGUUGUGUGUUAUUUAUUUUU_UGUUUUUUUUUUU__ ...(((((((..(((....)))..........................((((((((.......))))))))..............)))))))....... ( -9.49 = -10.30 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:32 2011