| Sequence ID | dm3.chrX |
|---|---|
| Location | 238,200 – 238,250 |
| Length | 50 |
| Max. P | 0.804718 |
| Location | 238,200 – 238,250 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 92.50 |
| Shannon entropy | 0.12350 |
| G+C content | 0.43278 |
| Mean single sequence MFE | -9.54 |
| Consensus MFE | -9.68 |
| Energy contribution | -9.64 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.94 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 238200 50 - 22422827 UGAAAGAGAGAUCGCUAACCUCGCCGGCUCGAUCUUUUGCAUAAAAAACU- ((...(((((((((....((.....))..))))))))).)).........- ( -10.70, z-score = -1.32, R) >droSim1.chrX 171698 50 - 17042790 UGAAAGAGAGAUCGCUAACCUCGCCGGCUCGAUCUUUUGCAUACAUAACU- ((...(((((((((....((.....))..))))))))).)).........- ( -10.70, z-score = -1.28, R) >droSec1.super_10 100434 50 - 3036183 UGAAAGAGAGAUCGCUAACCUCGCCGGCUCGAUCUUUUGCAUACAUAACU- ((...(((((((((....((.....))..))))))))).)).........- ( -10.70, z-score = -1.28, R) >droYak2.chrX 168893 51 - 21770863 UGAAAGAGAGAUCGCUAACCUCGCCGGCUUGAUCUUUUGCAUAAAAAAAUU ((...(((((((((....((.....))..))))))))).)).......... ( -9.00, z-score = -0.74, R) >droEre2.scaffold_4644 184244 51 - 2521924 UGAAAGAGAGAUCGCUAACCUCGCCGGCUUGAUCUUAUGCAUAAAAAAACU .......(((((((....((.....))..)))))))............... ( -6.60, z-score = -0.10, R) >consensus UGAAAGAGAGAUCGCUAACCUCGCCGGCUCGAUCUUUUGCAUAAAAAACU_ ((...(((((((((....((.....))..))))))))).)).......... ( -9.68 = -9.64 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:31 2011