| Sequence ID | dm3.chrX |
|---|---|
| Location | 226,967 – 227,018 |
| Length | 51 |
| Max. P | 0.510977 |
| Location | 226,967 – 227,018 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 69.74 |
| Shannon entropy | 0.50778 |
| G+C content | 0.45218 |
| Mean single sequence MFE | -13.86 |
| Consensus MFE | -4.67 |
| Energy contribution | -4.84 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 226967 51 - 22422827 AGAUGGGAAAAUGAUG-----CCACCGAAAAACA------AUGCCAGGU-AUGUUUUCCCAGA ...(((((((((.(((-----((...........------......)))-))))))))))).. ( -15.33, z-score = -2.88, R) >droPer1.super_17 1138015 63 - 1930428 ACAUGGAGAGUCGAGACAGACCCCCCGAGACAAAGGCGGCGUAUCAAAUAACAUUUUCCCAGA ....(((((((........((((.((........)).)).))..........))))))).... ( -10.37, z-score = -0.23, R) >dp4.chrXL_group1e 4196014 61 - 12523060 ACAUGGAGAGUCGAGACAGA-CCCCCGAGACAAAGGCGG-GUAUCAAAUAACAUUUUCCCAGA ....(((((((........(-(((((........)).))-))..........))))))).... ( -14.17, z-score = -1.59, R) >droYak2.chrX 156796 50 - 21770863 AGAUGGGAAAAAGAUG-----CCACCG-AAAACA------AUGCCAGGU-ACAUUUUCCCAGA ...((((((((.(.((-----((....-......------......)))-)).)))))))).. ( -12.99, z-score = -2.56, R) >droEre2.scaffold_4644 165436 51 - 2521924 AGAUGGGAAAAUGAUG-----CCACCGAAAAACA------AUGCCAGGU-ACAUUUUCCCAGA ...((((((((((.((-----((...........------......)))-))))))))))).. ( -17.23, z-score = -4.08, R) >droSec1.super_10 88442 51 - 3036183 AGAUGGGAAAAUGUGG-----CCACCGAAAAACA------AUGCCAGGU-AUGUUUUCCCAGA ...((((((((((((.-----((...........------......)))-))))))))))).. ( -14.33, z-score = -1.62, R) >droSim1.chrX 157400 51 - 17042790 AGAUGGGAAAAUGUGG-----UCUAUCGAAAACA------AUGCCAGGU-AUGUUUUCCCAGA ...(((((((((((..-----((....))..)).------((((...))-))))))))))).. ( -12.60, z-score = -1.31, R) >consensus AGAUGGGAAAAUGAGG_____CCACCGAAAAACA______AUGCCAGGU_ACAUUUUCCCAGA ...((((((((..........................................)))))))).. ( -4.67 = -4.84 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:30 2011