| Sequence ID | dm3.chrX |
|---|---|
| Location | 183,432 – 183,552 |
| Length | 120 |
| Max. P | 0.546479 |
| Location | 183,432 – 183,552 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.14 |
| Shannon entropy | 0.40904 |
| G+C content | 0.44335 |
| Mean single sequence MFE | -31.50 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.63 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 183432 120 + 22422827 CAGGGCUGAAGAAAUAUGCCAUAGGCAGCUAGUUUGCAAGUUUAUCGCUGUUCGACAGCGAAGAACAAGAACAGGGAAUACUCUGUAACAAGAACUCUGUAAGUCCACGGUUCAAUCCAA ..(((((..(((....((((...))))....((((....((((.((((((.....)))))).))))....((((((....)))))).....)))))))...)))))..((......)).. ( -36.20, z-score = -2.70, R) >droYak2.chrX 126109 97 + 21770863 CAGAGAUAAAGACAUUUGCCAUAGGCAGUUGG-----------AUUGCAUGUUGG-----------AAGAACAGGGAAUACUCUGUGCGAAGAACACUGUAGCUCAGCGGUACCAUCAA- ....(((....((...((((...))))((((.-----------.(((((((((..-----------..(.((((((....)))))).)....)))).)))))..)))).))...)))..- ( -24.50, z-score = -0.79, R) >droEre2.scaffold_4644 130900 115 + 2521924 CAGGAAUGAAGACAGUUGCCAUAGGCAGCAGAUUU-CAAGUUCAUUGCUGUUUGACAG---AGAACAAGAACAGGGAAUACUCUGUGCAAAGAACACUGUAAGUCAGCGGUACAACCAA- ..((..(((((.(.((((((...)))))).).)))-)).((((.(((((((((.....---.)))))...((((((....)))))))))).))))(((((......)))))....))..- ( -33.80, z-score = -2.62, R) >consensus CAGGGAUGAAGACAUUUGCCAUAGGCAGCUGGUUU_CAAGUU_AUUGCUGUUUGACAG___AGAACAAGAACAGGGAAUACUCUGUGCAAAGAACACUGUAAGUCAGCGGUACAAUCAA_ (((((...........((((...)))).................((.((((((...............)))))).))...)))))..........(((((......)))))......... (-13.84 = -14.63 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:29 2011