| Sequence ID | dm3.chrX |
|---|---|
| Location | 159,065 – 159,115 |
| Length | 50 |
| Max. P | 0.871579 |
| Location | 159,065 – 159,115 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 60.90 |
| Shannon entropy | 0.53237 |
| G+C content | 0.35283 |
| Mean single sequence MFE | -10.00 |
| Consensus MFE | -6.04 |
| Energy contribution | -5.27 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 159065 50 + 22422827 AACAGCAGUCUUCAAAAUACCUGUGAUACAAUUUU-UUGUCGC--AGCUAUGG ................(((.((((((((.......-.))))))--)).))).. ( -9.30, z-score = -1.23, R) >droSim1.chrX 98796 50 + 17042790 AAAAACAGUAUUCAUAUUAGCUGUGACACAAUUUU-UUGUCGA--AGCUAUGG .................(((((.(((((.......-.))))).--)))))... ( -10.20, z-score = -1.94, R) >droWil1.scaffold_181096 7563286 53 + 12416693 AGAUCAAAGCAUUAAUAUGGAUAUGGCAUUGUUUUGUUGCCGCCCAUUUAUGU ........((((....((((...(((((.........))))).))))..)))) ( -10.50, z-score = -0.42, R) >consensus AAAAACAGUCUUCAAAAUAGCUGUGACACAAUUUU_UUGUCGC__AGCUAUGG ................((((((.(((((.........)))))...)))))).. ( -6.04 = -5.27 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:25 2011