| Sequence ID | dm3.chrX |
|---|---|
| Location | 157,681 – 157,732 |
| Length | 51 |
| Max. P | 0.935302 |
| Location | 157,681 – 157,732 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.45340 |
| G+C content | 0.34010 |
| Mean single sequence MFE | -10.00 |
| Consensus MFE | -7.69 |
| Energy contribution | -7.83 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.935302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 157681 51 + 22422827 AGACACGUUUGGAGCUCACCUUUUGGAAUGUGUCUAAUU--AAAGUUAAAACC ((((((((((.(((.......))).))))))))))....--............ ( -12.80, z-score = -2.19, R) >droEre2.scaffold_4644 100914 53 + 2521924 AGACACGUUUGAAGCUCACCUUUUGGUAUGUGUUCAAUUUUAAAAUUUAAAUC .((((((((..(((......)))..).)))))))................... ( -7.20, z-score = -0.54, R) >droYak2.chrX 98980 52 + 21770863 GGACACGUUUGAAGCUCACCUUUUGGUAUAUGUCCAAUUUUAAAAUU-AAAUC (((((.((.....))..(((....)))...)))))............-..... ( -8.80, z-score = -1.41, R) >droSec1.super_10 29844 51 + 3036183 AGACACGUUUGGAGCUUACCUUUUGGAAUGUGUCUAAUU--AAAGUUAAAGUC ((((((((((.(((.......))).))))))))))....--............ ( -12.80, z-score = -2.35, R) >droSim1.chrX 96841 51 + 17042790 AGACACGUUUGGAGCUUACCUUUUGGAAUGUGUCUAAUU--AAAGUUAAAGUC ((((((((((.(((.......))).))))))))))....--............ ( -12.80, z-score = -2.35, R) >triCas2.ChLG4 6368340 51 + 13894384 AGAUAAGUCUUGAAUGGGCCUUUCUGAAGAUUCCUAAUCU--AAAUUAUUUCC ((((((.....((.((((....((....))..)))).)).--...)))))).. ( -5.60, z-score = 0.89, R) >consensus AGACACGUUUGGAGCUCACCUUUUGGAAUGUGUCUAAUU__AAAAUUAAAAUC (((((((((..(((......)))..).)))))))).................. ( -7.69 = -7.83 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:24 2011