| Sequence ID | dm3.chrX |
|---|---|
| Location | 97,521 – 97,600 |
| Length | 79 |
| Max. P | 0.703134 |
| Location | 97,521 – 97,600 |
|---|---|
| Length | 79 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 67.86 |
| Shannon entropy | 0.53481 |
| G+C content | 0.37267 |
| Mean single sequence MFE | -17.28 |
| Consensus MFE | -5.53 |
| Energy contribution | -5.70 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 97521 79 - 22422827 -CGGGAUUUUAUCCCGU--UUUAAUGCACGCUUUAUUUCACAAUUAGGCGGCUUUAG-ACUAAACUAAAACACUUUUAAUAUG---------------- -((((((...)))))).--(((((.((.(((((.(((....))).))))))).))))-)........................---------------- ( -16.20, z-score = -3.08, R) >droAna3.scaffold_13340 18516138 97 - 23697760 UAAGACCUCUUUUAUGUGGUUUCCGGUAAAGUUUAUUGCAUAUUGUAGUUGUUGGAAUAUUGAA--AAAUCAUUUUCAGCGACGGCUUGAAGUAAUUUA ((((.((.....((((..((...(......)...))..)))).....((((((((((...(((.--...))).)))))))))))))))).......... ( -21.20, z-score = -1.62, R) >droEre2.scaffold_4690 17189879 78 + 18748788 --CGGGCUUUAUCCCGU--UUCAGUGCACGCUUUAUUUCGCAAUUAGGCGGCUUUAA-ACUAAACUGAAACACUUUAAAUAAG---------------- --.(((......)))((--((((((((.(((((.(((....))).))))))).....-.....))))))))............---------------- ( -19.20, z-score = -2.67, R) >droYak2.chrX 4253542 79 - 21770863 -CGGAACUGUGUCCCGU--UUUAGUGCACGCUUUAUUUCACAAUUAGGCGGCCUUAA-ACGAAACUAAAACACUUUAAACAAG---------------- -.(((......)))(((--((.((.((.(((((.(((....))).))))))))).))-)))......................---------------- ( -15.40, z-score = -1.13, R) >droSec1.super_4 2550249 79 - 6179234 -CGGGACUUGAUCCCGU--UUCAUUUUACGCUUUAUUUCACAAUUAGGCGGCUUUAG-ACUAAACUAAAACACUUUCGAUGAG---------------- -(((((.....))))).--.(((((...(((((.(((....))).)))))(.(((((-......))))).)......))))).---------------- ( -15.70, z-score = -2.24, R) >droSim1.chrX 13818850 79 + 17042790 -CGGGACUUGAUCCCGU--UUCAUUUUACGCUUUAUUUCACAAUUAAGCGGCUUUAG-ACUAAACUAAAACACUUUCGAUGAG---------------- -(((((.....))))).--.(((((...(((((.(((....))).)))))(.(((((-......))))).)......))))).---------------- ( -16.00, z-score = -2.72, R) >consensus _CGGGACUUUAUCCCGU__UUCAGUGCACGCUUUAUUUCACAAUUAGGCGGCUUUAA_ACUAAACUAAAACACUUUCAAUAAG________________ .(((((.....)))))............(((((.(((....))).)))))................................................. ( -5.53 = -5.70 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:23 2011