| Sequence ID | dm3.chrX |
|---|---|
| Location | 90,869 – 90,932 |
| Length | 63 |
| Max. P | 0.860189 |
| Location | 90,869 – 90,932 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 58.79 |
| Shannon entropy | 0.67525 |
| G+C content | 0.38464 |
| Mean single sequence MFE | -11.25 |
| Consensus MFE | -3.76 |
| Energy contribution | -4.82 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 90869 63 - 22422827 AUUGUAAAAAAAAACAAGAGGGAAUGCUAUAGGCGAGUUC-CCCGACUAUCAGAUACCCGUUAC .((((........))))(.((((((((.....))..))))-))).................... ( -9.70, z-score = -0.32, R) >droAna3.scaffold_13047 23391 63 - 1816235 AACCUAAAACCCAAAAAAUUGGAACGCUAUAGUCGUAAGC-UCUGACUAUAAGAGAUUCUUUGC ..........((((....)))).....((((((((.....-..))))))))............. ( -9.00, z-score = -0.99, R) >dp4.chr4_group4 1414006 62 - 6586962 -CUGCAUAAAAAAAAGAGAGAGAGUGCUACAGUGGAGUGU-UUCGAUAAUGAGAUAUCCAUUAC -..((((................))))...((((((.(((-(((......)))))))))))).. ( -11.59, z-score = -1.91, R) >droMoj3.scaffold_6541 453015 59 + 2543558 AAUAUAAAUAAAAACAAGUAAGAAAGCUCUAGUCGAGACUGCUCGACUACGAGAUCCCC----- ..........................(((((((((((....)))))))).)))......----- ( -14.70, z-score = -4.08, R) >consensus AAUGUAAAAAAAAAAAAGAGAGAAUGCUAUAGUCGAGAGC_CCCGACUAUGAGAUACCC_UUAC ...........................((((((((((....))))))))))............. ( -3.76 = -4.82 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:22 2011