Locus 12444

Sequence ID	dm3.chrX
Location	44,390 – 44,452
Length	62
Max. P	0.716459

overview

Window 7

Location	44,390 – 44,452
Length	62
Sequences	5
Columns	65
Reading direction	forward
Mean pairwise identity	59.34
Shannon entropy	0.73092
G+C content	0.34617
Mean single sequence MFE	-9.42
Consensus MFE	-4.50
Energy contribution	-4.66
Covariance contribution	0.16
Combinations/Pair	2.00
Mean z-score	-0.57
Structure conservation index	0.48
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.49
SVM RNA-class probability	0.716459
Prediction	RNA
WARNING	Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chrX 44390 62 + 22422827
GAUCUAAAACGUGCCCAAAAUGUUUUAGGCUUACGGGUA--UAAACAGGCAAAUCAAUUAAUAA-
((((((((((((.......)))))))))((((.......--.....))))..))).........- (  -9.90, z-score =  -0.82, R)
>droSec1.super_108 34233 62 + 76128
AAUCUAAAGCGUGCCAAAAAGAUUUUAGGCAUACGGAUA--UAAAAAGGCAAAUCAAUUAAUAA-
.((((...(..((((.(((....))).))))..))))).--.......................- (  -7.10, z-score =  -0.32, R)
>droSim1.chrX 28590 62 + 17042790
AAUCUAAAGCGUGCCAAAAAGAUUUUAGGCAUACGGAUA--UAAAAAGGCAAAUCAAUUAAUAA-
.((((...(..((((.(((....))).))))..))))).--.......................- (  -7.10, z-score =  -0.32, R)
>droMoj3.scaffold_6328 1410791 63 + 4453435
-AGCCGAGAUGCACUCAAAGCGUUUCAGUUAGAUCUUUAGAUUUUGACGUAAAGCAACUAUAAA-
-.((.(((((((.......))))))).((((((((....)).)))))).....)).........- ( -13.90, z-score =  -1.77, R)
>droGri2.scaffold_14853 5638132 56 - 10151454
AAUC--GAUCGUUC---AUGCGCCCCAAAUACACGCUU---UGGACAUGCCAAU-AAUUGAUGGA
.(((--(((..(((---(((....(((((.......))---))).))))..)).-.))))))... (  -9.10, z-score =   0.38, R)
>consensus
AAUCUAAAACGUGCCAAAAACGUUUUAGGCAUACGGAUA__UAAAAAGGCAAAUCAAUUAAUAA_
..((((((((((.......)))))))))).................................... ( -4.50 =  -4.66 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:21 2011