| Sequence ID | dm3.chrX |
|---|---|
| Location | 29,798 – 29,859 |
| Length | 61 |
| Max. P | 0.580351 |
| Location | 29,798 – 29,859 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | forward |
| Mean pairwise identity | 63.96 |
| Shannon entropy | 0.58915 |
| G+C content | 0.37295 |
| Mean single sequence MFE | -9.27 |
| Consensus MFE | -5.39 |
| Energy contribution | -5.20 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 29798 61 + 22422827 -UCACGCAAGGACAAACAUUAAGUUAAGGCCUAGUUCCUAUUAUACUAGGAAUACUCAAUCC -....((...(((.........)))...))...(((((((......)))))))......... ( -9.40, z-score = -1.18, R) >droSec1.super_108 19682 61 + 76128 -UCACGCAAGGACAAGUAUUAAGUAAAGUUAUAGUUCCUAUUAUACUAGGAAUACUGCAUUC -....(((..(((..............)))...(((((((......)))))))..))).... ( -8.84, z-score = -0.68, R) >droSim1.chrX 14392 61 + 17042790 -UCGCGCAAGGACAAGUAUUAAGUAAAGUUAUAGUUCCUAUUAUACUAGGAAUACUGCAUUC -....(((..(((..............)))...(((((((......)))))))..))).... ( -8.84, z-score = -0.33, R) >anoGam1.chrX 6030888 61 - 22145176 CUAUCGUACGAAUAUUCGUAGAGCGUUGCCGAAGGCUCCAAU-UAGUGCAAACAUCCUUUCA .....((((((....))...((((.((....)).))))....-..))))............. ( -10.00, z-score = -0.13, R) >consensus _UCACGCAAGGACAAGCAUUAAGUAAAGUCAUAGUUCCUAUUAUACUAGGAAUACUCCAUCC ....(....).......................(((((((......)))))))......... ( -5.39 = -5.20 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:20 2011