Locus 12441

Sequence ID dm3.chrXHet
Location 200,733 – 200,850
Length 117
Max. P 0.500000
window17101

overview

Window 1

Location 200,733 – 200,850
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 51.82
Shannon entropy 0.69616
G+C content 0.48241
Mean single sequence MFE -35.63
Consensus MFE -7.20
Energy contribution -6.77
Covariance contribution -0.43
Combinations/Pair 1.64
Mean z-score -2.14
Structure conservation index 0.20
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chrXHet 200733 117 + 204112
UCUAUUUAACUUGGUAAUGGACAGGUUACUUAGAACCUUACCCAGCGAAAUUGGUGCCAAAGUCGGAAAUGCCAUUA---CUAACGCGGCCGCGUUUGCAGAUGAUUUGGUACUAUUUGC
((((..(((((((........)))))))..))))..........(((((..((((((((((.(((....(((.....---..(((((....))))).)))..)))))))))))))))))) ( -34.50, z-score =  -2.14, R)
>apiMel3.GroupUn 354530827 117 - 399230636
GCUUUUUAACCUAAUAAUAGAUCCCAUAACAAGGACACUCGACGAAACGACGGGCAUCAAACUAGAAAACGAGAACA---UUUCAGUUCUCGCCUUCGCGGACGACCUUGUCCUUUUGGC
.......................(((....(((((((.(((.((...(((.((((.((......))....((((((.---.....)))))))))))))))..)))...))))))).))). ( -29.00, z-score =  -2.46, R)
>triCas2.chrUn_140 8094 120 - 34632
CCUCUUUAACCUGGUCUUGGACCGGGCUCUGAAGAGGCUGUCCACUGAUGUGGGCUUUCGUCUAACGGAUGCAACCAAAGUUACGGCACUCGCUUUUGCGGACGACGUCGUUCUGUGCGC
((((((((.(((((((...)))))))...))))))))..((((((....))))))...((((.....))))..............((((..((....))(((((....))))).)))).. ( -43.40, z-score =  -1.82, R)
>consensus
CCUAUUUAACCUGGUAAUGGACCGGAUACUAAGGACACUACCCAAAGAAAUGGGCAUCAAACUAGAAAAUGCAAACA___UUACAGCACUCGCCUUUGCGGACGACCUCGUACUAUUCGC
.............................(((((.....(((((......)))))..................................((((....))))....))))).......... ( -7.20 =  -6.77 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:16 2011