| Sequence ID | dm3.chrXHet |
|---|---|
| Location | 199,272 – 199,336 |
| Length | 64 |
| Max. P | 0.538188 |
| Location | 199,272 – 199,336 |
|---|---|
| Length | 64 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 55.10 |
| Shannon entropy | 0.63735 |
| G+C content | 0.54167 |
| Mean single sequence MFE | -23.93 |
| Consensus MFE | -6.30 |
| Energy contribution | -5.53 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrXHet 199272 64 + 204112 --UCCCUGCACAGUAUGUGGCCGGUCCUUUAACAGCAAGAGAGGACUCGGUGUUCACAUGCGAUCU --..........((((((((((((((((((.........))))))).))))...)))))))..... ( -23.00, z-score = -2.32, R) >dp4.Unknown_group_254 18223 66 - 21915 UACCAAUGCACGAUAUGUGAAGCGUCAUGCCGUAGCAAAAGCGGACUUGGCGUUCAUAUGUCGCGU .......((.(((((((((((.(((((..((((.......))))...)))))))))))))))).)) ( -27.20, z-score = -3.41, R) >triCas2.chrUn_140 6627 64 - 34632 --UCCAUGCCCGUAUUGUGCACGGUCGUUUACCACCGCCAAUGGCCGCGGGUUGCAUAUACGGAGG --.......((((((.(((((.(((.....))).((((........))))..)))))))))))... ( -21.60, z-score = -0.27, R) >consensus __UCCAUGCACGAUAUGUGAACGGUCAUUUAACAGCAAAAGAGGACUCGGCGUUCAUAUGCGGAGU ............(((((((((.........(((..(((........)))))))))))))))..... ( -6.30 = -5.53 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:16 2011