| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,411,560 – 9,411,629 |
| Length | 69 |
| Max. P | 0.587354 |
| Location | 9,411,560 – 9,411,629 |
|---|---|
| Length | 69 |
| Sequences | 8 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 62.63 |
| Shannon entropy | 0.67766 |
| G+C content | 0.42868 |
| Mean single sequence MFE | -14.21 |
| Consensus MFE | -4.29 |
| Energy contribution | -4.49 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9411560 69 - 23011544 -UUAUGGGAAAUGAUA-GGGUUGAUAGCGAACG-----ACAAGCGGCAAUCAUUUCGCAGAUCAUUUCUGGGAGAG------ -...(.(((((((((.-..((((........))-----))..((((........))))..))))))))).).....------ ( -15.90, z-score = -1.75, R) >droSim1.chr2L 9187913 67 - 22036055 ---UCAGGAAAUGAUA-GGGUUGAUAGCGAACG-----ACAAGCGGCAAUCAUUUCGCAGAUCAUUUCUGGGCGAG------ ---...(((((((((.-..((((........))-----))..((((........))))..))))))))).......------ ( -15.40, z-score = -1.09, R) >droSec1.super_3 4865218 67 - 7220098 ---UAAGGAAAUGAUA-GGGUUGAUAGCGAACG-----ACAAGCGGCAAUCAUUUCGCAGAUCAUUUCUGGGAGAG------ ---...(((((((((.-..((((........))-----))..((((........))))..))))))))).......------ ( -15.40, z-score = -1.97, R) >droYak2.chr2L 12082885 67 - 22324452 ---UUGGGAAAUGAUA-GGGUUGAUAGCGAACG-----ACAAGCAGCAAUCAUUUCUCAGAUCAUUUCUGGGGGAG------ ---((.(((((((((.-(((.((((.((.....-----.......)).))))...)))..))))))))).))....------ ( -16.80, z-score = -2.14, R) >droEre2.scaffold_4929 10020648 67 - 26641161 ---UCGGGAAAUGAUG-GGGUUGAUAGCAAACG-----ACAAGCAGCAAUCAUUUCUCAGAUCAUUUCUGGGGGAG------ ---((.(((((((((.-(((.((((.((.....-----.......)).))))...)))..))))))))).))....------ ( -18.50, z-score = -2.69, R) >droAna3.scaffold_12943 763376 81 - 5039921 UUGCAAUAGAAUGACUUUGAUU-AUGACAAAUAAUUGUAUUGCUAACAAUCACUUCAUCAAAUAUCUGGAUAUUUUCCUGUU ..((((((.(((...((((...-....))))..))).))))))........................(((.....))).... ( -11.30, z-score = -0.42, R) >dp4.chr4_group1 4386789 55 + 5278887 -------------AUAUGAAUUGAUAGCACACG-----ACAAGCGGCAAUCAAGGCAGAGAUAGUUUUCGCAG--------- -------------...((..(((((.((.(.(.-----....).))).)))))..))((((....))))....--------- ( -10.20, z-score = -1.53, R) >droPer1.super_5 4319203 55 - 6813705 -------------AUAUGAAUUGAUAGCACACG-----ACAAGCGGCAAUCAAGGCAGAGAUAGUUUUCGCAG--------- -------------...((..(((((.((.(.(.-----....).))).)))))..))((((....))))....--------- ( -10.20, z-score = -1.53, R) >consensus ___U_AGGAAAUGAUA_GGGUUGAUAGCAAACG_____ACAAGCGGCAAUCAUUUCACAGAUCAUUUCUGGGGGAG______ ..................(((((...((..............))..)))))......((((.....))))............ ( -4.29 = -4.49 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:15 2011