| Sequence ID | dm3.chrXHet |
|---|---|
| Location | 198,851 – 198,910 |
| Length | 59 |
| Max. P | 0.996979 |
| Location | 198,851 – 198,910 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 50.59 |
| Shannon entropy | 0.68887 |
| G+C content | 0.54113 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -9.26 |
| Energy contribution | -10.17 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.02 |
| SVM RNA-class probability | 0.996979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrXHet 198851 59 + 204112 AUUGGGUGCCUCCGCGUGAAUGGCGAGCUGAUCACUGAUUGGGGUGACUGCGCACGAGU .....((((...(((.......))).((.(.(((((......)))))).)))))).... ( -15.80, z-score = 0.73, R) >droAna3.scaffold_13417 2505009 52 - 6960332 GUUUGUGCCCUACUGGUUGUAGGCUAAUUGCUUACAAUCUGGAAGGACUGUG------- ........(((.((((((((((((.....)))))))))).)).)))......------- ( -17.30, z-score = -2.88, R) >droGri2.scaffold_15040 43551 51 - 162499 GUAAGUGGCCUCCGUGUCGGUGACGUUCAGUUAACGGCAUGGAGUGACUGC-------- ...(((.((.(((((((((.((((.....)))).))))))))))).)))..-------- ( -23.00, z-score = -3.74, R) >consensus GUUAGUGGCCUCCGCGUCGAUGGCGAACUGAUAACAGAAUGGAGUGACUGCG_______ ...(((.((.(((((((((.((((.....)))).))))))))))).))).......... ( -9.26 = -10.17 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:15 2011