| Sequence ID | dm3.chrXHet |
|---|---|
| Location | 184,061 – 184,187 |
| Length | 126 |
| Max. P | 0.750611 |
| Location | 184,061 – 184,187 |
|---|---|
| Length | 126 |
| Sequences | 14 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.40748 |
| G+C content | 0.44478 |
| Mean single sequence MFE | -32.24 |
| Consensus MFE | -26.06 |
| Energy contribution | -26.90 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrXHet 184061 126 + 204112 ----AAAAUGAAUUAUAAAACUCUAGGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ----......................(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.70, z-score = -0.90, R) >droSim1.chrU 3446155 126 - 15797150 ----AAAAUGAAUUAUAAAACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ----......................(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -1.07, R) >droSec1.super_2810 720 126 - 2974 ----AAAUUGAAUUAUAAAACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ----......................(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -0.96, R) >droYak2.chrU 3521061 126 + 28119190 ----GAAAUAAAUUAUACAACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAAUUUUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUUAACGCAUAUCGC ----......................((((((..((....))..)))..(((((((..((.(((((......))))))).(((((((..(....)..))))))).)))))))........)))....... ( -33.40, z-score = -1.76, R) >droEre2.scaffold_4858 122433 126 + 183471 ----AAAAUGAAUUAUAAAACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ----......................(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -1.07, R) >droAna3.scaffold_13335 45993 121 - 3335858 ---------UAUUUAUAAAACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ---------.................(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -1.31, R) >droPer1.super_271 18073 129 + 28417 AAUAAACAAAUUU-UAAUCACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC .............-............(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -1.02, R) >dp4.Unknown_group_34 5425 129 + 38752 AAUAAACAAAUUU-UAAUCACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC .............-............(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -1.02, R) >droWil1.scaffold_181088 40192 130 - 89035 AACAAACAAUUUAAUAAUCACUCUAAGCGGUGGAUCACUCGGAUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ..........................((((((((((.....))))....(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))............)))))) ( -34.90, z-score = -1.35, R) >droVir3.scaffold_12926 128 128 - 109578 AACCAAUA-UAAAU-UAUCACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ........-.....-...........(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -0.84, R) >droMoj3.scaffold_6499 221272 130 - 421677 AACCAAAAACAAAUAUAUCACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ..........................(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).)))....... ( -33.90, z-score = -0.92, R) >droGri2.scaffold_15040 37500 128 - 162499 AACAAAAAAAAAUUGUAUCACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUC-- .((((.......))))..........(((((.((....)).))(((...(((((((..((.(((((....)))))..)).(((((((..(....)..))))))).)))))))....))).))).....-- ( -34.00, z-score = -1.25, R) >anoGam1.chrU 32826665 126 - 59568033 ----AAAGGCACUCUUUAAACCCUAGGCAGGGGAUCACUCGGCUCAUGGAUCGAUGAAGACCGCAGCUAAAUGCGCGUCAUAAUGUGAACUGCAGGACACAUGAACAUUGAUAAGUUGAACGCAUAUGGC ----....((..........((((....))))......((((((.....(((((((..(((((((......)))).)))...(((((..(....)..)))))...))))))).))))))..))....... ( -33.30, z-score = -0.78, R) >triCas2.ChLG3 15629919 106 + 32080666 ------------------------UAACGUAAAUACACAACUUUUAGCAUUGAGUAAAGAAAACAGAAAAUUGGGCAACACUACUAGUACAAAAGGAAAUACUAACAUUGCCACUUUAACUGCAUAUCGU ------------------------......................(((.....(((((....(((....)))(((((......(((((..........)))))...))))).)))))..)))....... ( -10.90, z-score = 0.78, R) >consensus ____AAAAAAAAUUAUAAAACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGC ..........................(((((.((....)).))(((...(((((((..((.((((........)))))).(((((((..(....)..))))))).)))))))....))).)))....... (-26.06 = -26.90 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:14 2011