| Sequence ID | dm3.chrXHet |
|---|---|
| Location | 158,238 – 158,357 |
| Length | 119 |
| Max. P | 0.604160 |
| Location | 158,238 – 158,357 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 47.80 |
| Shannon entropy | 0.84904 |
| G+C content | 0.48542 |
| Mean single sequence MFE | -37.73 |
| Consensus MFE | -7.26 |
| Energy contribution | -10.08 |
| Covariance contribution | 2.81 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrXHet 158238 119 + 204112 GUGUCCUAAAGCUAUGCUGCUGAUCAGUAUUUUCCUGAUCGGUGCUGCGAGCUGACUUAGCGCUCGUUGAAGCCGGAUUGGCUGAAUGCCAUCUGGACCUGGAGCUUUGUAGGGCUGGA- ..(((((((((((..((.(((((((((.......))))))))))).((((((.........)))))).....((((((.(((.....)))))))))......)))))..))))))....- ( -46.20, z-score = -2.52, R) >droYak2.chrU 8547710 114 + 28119190 -----CCGUGCUUAAGUAAGCUGUGAAUAUAGCUUGUAGCCAUGGGGUGAUCACUUCUUCGGUCACCUGUAGCAUGGCUGGAAAUAUUCCAUCUAGUCCCGGUGCUUU-UAUUCCCGGAG -----(((((((....((((((((....))))))))........((((((((........))))))))..)))))))((((.((((...((((.......))))....-)))).)))).. ( -35.70, z-score = -1.66, R) >dp4.Unknown_group_433 8437 114 + 12045 -----CUGUACUUAGACAAGCUGUGAAUACUGCGGAGAGCCAUAGGGUAAUCGCCUCUUUGGUCACCUGCAUCAUGGCUGGGAGUACCCUGUCAAGUCCUGCUGCUUU-UGUGCCCGCAA -----..(.((((.((((((((((((....(((((...((((.(((((....))).)).))))...)))))))))))))(((....))))))))))).)(((.((...-...))..))). ( -37.00, z-score = -0.52, R) >droWil1.scaffold_180026 1854 114 + 3204 -----CGGUAGCAAAACUGCUUACAAGUAGCUUUUUCAAAACAUGUUUGAUAAACUCAAAUCCCUUUUGGAGCAGAACAGGAUAAAUCCCAUCCGCUCCUGGAGAUUUGAAAGGAGCAA- -----..((((((....))).))).....(((((((((((.....))))).....(((((((((....(((((.((...(((....)))..)).))))).)).))))))).))))))..- ( -32.00, z-score = -2.62, R) >consensus _____CUGUACCUAAACAACCUAUGAAUAUUGCUUUGAGCCAUGGGGUGAUCACCUCUAAGGCCACCUGAAGCAGGACUGGAAAAAUCCCAUCUAGUCCUGGAGCUUU_UAUGCCCGGA_ .........(((......))).................(((....)))............((((((..(((.((((((((((((.....)))))))))))).))).....)))))).... ( -7.26 = -10.08 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:04 2011