Locus 12432

Sequence ID dm3.chrXHet
Location 151,595 – 151,651
Length 56
Max. P 0.995159
window17085 window17086

overview

Window 5

Location 151,595 – 151,651
Length 56
Sequences 3
Columns 56
Reading direction forward
Mean pairwise identity 66.07
Shannon entropy 0.47105
G+C content 0.40807
Mean single sequence MFE -10.27
Consensus MFE -10.52
Energy contribution -8.97
Covariance contribution -1.55
Combinations/Pair 1.83
Mean z-score -2.35
Structure conservation index 1.02
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.77
SVM RNA-class probability 0.995159
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrXHet 151595 56 + 204112
CUAGUAAUUCAACCAAAGGGGGCGAAGUCAAGCCCUCCAACAUAAUCGUCCUAAAA
.................((((((........)))).)).................. ( -11.30, z-score =  -1.68, R)
>droWil1.scaffold_181139 259246 54 - 724996
CCAACCGUUCAGC--AAGAGGACGAAGUCAAGUCCUCCACCAUAAUCAUUUUGCUA
..........(((--((((((((........)))))).............))))). ( -12.31, z-score =  -3.19, R)
>droVir3.scaffold_12970 10872781 54 - 11907090
UAAGUAAU--AAGCAAAGAGAGUGAAGUCAAAUUCUCCACCAUAAUCGGUUUAAAU
........--.......((((((........)))))).(((......)))...... (  -7.20, z-score =  -2.19, R)
>consensus
CAAGUAAUUCAACCAAAGAGGGCGAAGUCAAGUCCUCCACCAUAAUCGUUUUAAAA
.................((((((........))))))................... (-10.52 =  -8.97 +  -1.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 151,595 – 151,651
Length 56
Sequences 3
Columns 56
Reading direction reverse
Mean pairwise identity 66.07
Shannon entropy 0.47105
G+C content 0.40807
Mean single sequence MFE -11.24
Consensus MFE -7.47
Energy contribution -7.03
Covariance contribution -0.44
Combinations/Pair 1.43
Mean z-score -1.19
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.82
SVM RNA-class probability 0.827205
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrXHet 151595 56 - 204112
UUUUAGGACGAUUAUGUUGGAGGGCUUGACUUCGCCCCCUUUGGUUGAAUUACUAG
........((((((....((.((((........))))))..))))))......... ( -13.50, z-score =  -1.12, R)
>droWil1.scaffold_181139 259246 54 + 724996
UAGCAAAAUGAUUAUGGUGGAGGACUUGACUUCGUCCUCUU--GCUGAACGGUUGG
(((((.............(((((((........))))))))--))))......... ( -13.01, z-score =  -1.17, R)
>droVir3.scaffold_12970 10872781 54 + 11907090
AUUUAAACCGAUUAUGGUGGAGAAUUUGACUUCACUCUCUUUGCUU--AUUACUUA
.........(((...((..((((...((....))...))))..)).--)))..... (  -7.20, z-score =  -1.27, R)
>consensus
UUUUAAAACGAUUAUGGUGGAGGACUUGACUUCGCCCUCUUUGGUUGAAUUACUAG
..................(((((((........)))))))................ ( -7.47 =  -7.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:03 2011