| Sequence ID | dm3.chrXHet |
|---|---|
| Location | 63,846 – 63,941 |
| Length | 95 |
| Max. P | 0.814686 |
| Location | 63,846 – 63,941 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.14 |
| Shannon entropy | 0.42365 |
| G+C content | 0.36373 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -10.41 |
| Energy contribution | -10.35 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrXHet 63846 95 - 204112 AUAAGAGCUAGACAUUUCUAGUUCCCACAAAAUUUUUGUGAGGUAAUGAGUAAUAAGCGUAAAUAUCUCAUUCGCGGCUUUUAUCAUUCGAGACU--- ....((((((((....)))))))).(((((.....))))).(((((.((((.....(((.............))).)))))))))..........--- ( -20.12, z-score = -1.52, R) >droSim1.chrXh_random 46038 90 + 84659 AUAAGAGCUAGACAUUUCUAGUUCCCACAAACUUUUUGUG-------GGGUAUUAGCGGUAAAUAUCGCAUUCGCGGCGUUUAUAAUUCGAGACUCA- ....(((((.((.....(((((((((((((.....)))))-------))).)))))..((((((..(((....)))..))))))...)).)).))).- ( -27.30, z-score = -3.63, R) >droSec1.super_109 55091 90 + 87397 AUAAGAGCUAGACAUUUCUAGUUCCCACAAACUUUUUGUG-------GGGUAUUAGCGGUAAAUAUCGCAUUCGCGGCGUUUAUAAUUCGAUACUCA- ....((((((((....))))))))((((((.....)))))-------)((((((....((((((..(((....)))..)))))).....))))))..- ( -28.90, z-score = -4.50, R) >droYak2.chrXh 39180 91 + 172766 AUAGGAA-GGUAUAGUCCUAGUUUCCACACACUUCUUUUAG------UAUAACUUAACUGGUAUAUCUUAUUCGAGGCGUAUAUAAUUUGAGACUUUU .(((((.-.......)))))(((((.............(((------(........))))((((..(((....)))..)))).......))))).... ( -12.60, z-score = 1.02, R) >consensus AUAAGAGCUAGACAUUUCUAGUUCCCACAAACUUUUUGUG_______GAGUAUUAACCGUAAAUAUCGCAUUCGCGGCGUUUAUAAUUCGAGACUCA_ ....(((((((......)))))))..................................(((((..((((....))))..))))).............. (-10.41 = -10.35 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:02:02 2011