| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,411,114 – 9,411,216 |
| Length | 102 |
| Max. P | 0.854273 |
| Location | 9,411,114 – 9,411,216 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.77 |
| Shannon entropy | 0.41394 |
| G+C content | 0.48129 |
| Mean single sequence MFE | -34.24 |
| Consensus MFE | -21.52 |
| Energy contribution | -22.56 |
| Covariance contribution | 1.05 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9411114 102 - 23011544 UGUACUGCCAUGGG---------UGAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGAGCCAGAAACAG ....(((...(.((---------((((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))).)..)))...... ( -38.30, z-score = -2.12, R) >droSim1.chr2L 9187487 102 - 22036055 UGUACUGCCAUGGG---------UGAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGAGCCAGAAACAG ....(((...(.((---------((((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))).)..)))...... ( -38.30, z-score = -2.12, R) >droSec1.super_3 4864785 102 - 7220098 UGUACUGCCAUGGG---------UGAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGAGCCAGAAACAG ....(((...(.((---------((((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..)))))))).)..)))...... ( -38.30, z-score = -2.12, R) >droYak2.chr2L 12082375 102 - 22324452 UGUACUGCCAUGGG---------UGAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCACAGCUAGAAAGAG ....(((...((.(---------((((((..(.((((.(((((..(((-.(((((((....)))))))....)))..))))).)))).)..))))))).))..)))...... ( -33.90, z-score = -1.27, R) >droEre2.scaffold_4929 10020169 102 - 26641161 UGUACUGCCAUGGC---------UGAGUGGGUGUGUUUGCCUUGGGUU-UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGAGCUAGAAACAG ....(((...((((---------(..((((((((((((((((.(....-..))))))))).((((.((((((....)))))).))))...))))))))..)))))....))) ( -35.70, z-score = -1.40, R) >droAna3.scaffold_12943 762936 100 - 5039921 UGUACUGCUCUGGAAGGAGUGUCGGGGGGGAUGUGUUUGCCUUGGGUUCUGCCGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAGAGGCUG------------ (((.(((((..((....(((...((((.(((((((((((((...((.....))))))))))))))).))))..))).....)))))))..))).......------------ ( -31.10, z-score = 0.01, R) >droWil1.scaffold_180772 1343450 95 + 8906247 UUUAAGCCUCUG-----------CACAUGAAAAUGUUUG-CAGGGGUU-UGU--GCAAAUAUAUUUGCUUUUAAUUAAAAACCAGAGGAAAUCCGAACAGACCAACACAG-- ..((((((((((-----------(((((....))))..)-))))))))-)).--(((((....)))))..................((....))................-- ( -24.10, z-score = -2.60, R) >consensus UGUACUGCCAUGGG_________UGAGUGGGUGUGUUUGCCUUGGGUU_UGCAGGCAAACAUGUUUGCUUUUAAUUAAAGGCCAGCAGGGACAUUCGCCGAGCCAGAAACAG (((.((((..(((...........(((..((..(((((((((..........)))))))))..))..)))...........)))))))..)))................... (-21.52 = -22.56 + 1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:14 2011