| Sequence ID | dm3.chrM |
|---|---|
| Location | 1,306 – 1,397 |
| Length | 91 |
| Max. P | 0.591574 |
| Location | 1,306 – 1,397 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 70.55 |
| Shannon entropy | 0.62582 |
| G+C content | 0.28133 |
| Mean single sequence MFE | -13.05 |
| Consensus MFE | -7.43 |
| Energy contribution | -6.78 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrM 1306 91 - 19517 --GGACAAA-UUAAUUAGGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGGAGUAA-GU-UUUACUAAGGCUUAAAGAAA-UUUCUUUA --.......-....((((((((((..((((....))))...(((((...((((.....)))).)-))-))...)))))))))).....-........ ( -11.80, z-score = 0.37, R) >droSim1.chrM 1308 92 - 14972 --GGACAAAUUUUGUUAGGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGGAGUAA-UU-UUUACUAAGGCUUAAAGAAA-UUUCUUUA --(((.(((((((.((((((((((..((((....)))).(((((.......)))))........-..-.....)))))))))).))))-))).))). ( -15.70, z-score = -0.93, R) >droSec1.super_1256 524 92 - 5360 --GGACAAAUUUUAUUAGGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGGAGUAA-UU-UUUACUAAGGCUUAAAGAAA-UUUCUUUA --(((.(((((((.((((((((((..((((....)))).(((((.......)))))........-..-.....)))))))))).))))-))).))). ( -15.70, z-score = -1.25, R) >droEre2.scaffold_1390 2461 88 + 16738 --------UUUAAUUAAGGUCUUAUAGUCAACAAUGACGUCAAACUGCAAUUUUGAAGGAGUAA-AAUUUUACUAAGACUUAAAGGAACACCCUUUA --------........(((((((...((((....)))).(((((.......)))))...(((((-....))))))))))))(((((.....))))). ( -15.90, z-score = -1.35, R) >droYak2.chrM 1309 88 - 16019 --------UUAAAUCUAGGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGGAGUAA-AUUUUUACUAAGACUUAAAGGAAUACCCUUUA --------........(((((((...((((....)))).(((((.......)))))...(((((-....))))))))))))(((((.....))))). ( -13.70, z-score = -0.53, R) >droAna3.scaffold_3895 2397 92 - 16885 -----UAACAAAUAUUAGGUCUUAUAGUCAACAAUGACAUCAAACUGCAAUUUUGAAGGAGUAAUAAAUUUACUAAGGCUUAAAGGAUACUCCCAUA -----.........(((((((((...((((....)))).(((((.......)))))...(((((.....)))))))))))))).((......))... ( -16.30, z-score = -1.68, R) >dp4.Unknown_singleton_1951 1975 78 - 2432 -----------------AGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGAAGUAA-AAAUUUACUAAGGCUUAAAGGAUUACCCCUA- -----------------((((((..((((..........(((((.......)))))...(((((-....)))))..))))...)))))).......- ( -10.60, z-score = -0.27, R) >droPer1.super_782 1796 78 + 8668 -----------------AGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGGAGUAA-AAAUUUACUAAGGCUUAAAGGAUUACCCCUA- -----------------((((((..((((..........(((((.......)))))...(((((-....)))))..))))...)))))).......- ( -10.70, z-score = 0.19, R) >droWil1.scaffold_181148 1119063 78 + 5435427 -----------------GGUCUUAUAGUCAAUAAUGACAUCAAACUGCAAUUUUGAAAGAGUAA-AUAUUUACUAAGGCUUAAAGGAA-UUCCUAUA -----------------((((((...((((....)))).(((((.......)))))...(((((-....)))))))))))...(((..-..)))... ( -12.80, z-score = -1.09, R) >droVir3.scaffold_13324 800765 95 - 2960039 UAGUAAAAUUAUAAAUUGGUCUUAUAGUCAAUAUUGACAUCAAACUGCAAUUUUGAAGGAGUAA-UUAAUUACUAAGGCUUAAAGGAU-UUCCUAUA ((((((.......(((((.((((...((((....)))).(((((.......))))))))).)))-))..))))))........(((..-..)))... ( -14.00, z-score = -0.24, R) >droMoj3.scaffold_6491 2221 87 + 371842 ------AAUUAUUA--UGGUCUUAUAGUCAACAAUGAUAUCAAACUGCAAUUUUGAAGGUGUAA--AAUUUACUAAGGCUUAAAGGGUGUACCUAUA ------........--.(((((((..((((....)))).(((((.......)))))........--.......)))))))...(((.....)))... ( -10.80, z-score = 1.07, R) >triCas2.chrUn_1 961150 71 + 1280983 ---------------------AUGCAAUUAGCGCCAAUUUC---UCGUAGUUCCGGAAAAUCAACCAUUUUGAAAAUAAUGCAGUUGAACUCAAA-- ---------------------..((.....)).....((((---.((......)))))).(((((((((.(....).))))..))))).......-- ( -8.60, z-score = 0.25, R) >consensus _________U_U_A_UAGGUCUUAUAGUCAAUAAUGAUAUCAAACUGCAAUUUUGAAGGAGUAA_AAAUUUACUAAGGCUUAAAGGAA_UUCCUUUA .................(((((((..((((....)))).(((((.......)))))....((((.....)))))))))))....((.....)).... ( -7.43 = -6.78 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:59 2011