| Sequence ID | dm3.chr4 |
|---|---|
| Location | 1,218,156 – 1,218,209 |
| Length | 53 |
| Max. P | 0.820683 |
| Location | 1,218,156 – 1,218,209 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 74.85 |
| Shannon entropy | 0.33832 |
| G+C content | 0.36809 |
| Mean single sequence MFE | -6.73 |
| Consensus MFE | -6.02 |
| Energy contribution | -6.47 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.820683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 1218156 53 + 1351857 UUAAACCUCAGA----UUUGACAAACAACAUGUUGCCUUCGGCUACAAAAAUUUUCG ............----..............(((.(((...))).))).......... ( -4.80, z-score = -0.38, R) >droSec1.super_40 66890 53 - 298270 CCCAACCUCAUA----AUUCACAAACAAAAUUUUGCCGUCGGCAACAAAUAUUUUCG ............----................(((((...)))))............ ( -4.20, z-score = -1.14, R) >droYak2.chr2R 1298334 57 + 21139217 UUAAACUUUAUAGGCAUUUGACAAACAAAAUGUUGCCGUCGGCAGCAACAUUUUACG ..........................((((((((((.(....).))))))))))... ( -11.20, z-score = -1.74, R) >consensus UUAAACCUCAUA____UUUGACAAACAAAAUGUUGCCGUCGGCAACAAAAAUUUUCG ..............................(((((((...))))))).......... ( -6.02 = -6.47 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:56 2011