| Sequence ID | dm3.chr4 |
|---|---|
| Location | 1,153,552 – 1,153,625 |
| Length | 73 |
| Max. P | 0.539675 |
| Location | 1,153,552 – 1,153,625 |
|---|---|
| Length | 73 |
| Sequences | 4 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 64.85 |
| Shannon entropy | 0.56933 |
| G+C content | 0.35346 |
| Mean single sequence MFE | -12.32 |
| Consensus MFE | -7.40 |
| Energy contribution | -8.02 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.56 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 1153552 73 + 1351857 UUACCAGACGAGUUGAUCUAGCAAUGUGCGU-UUGUCCGAAUGCUGAGAUUUGUCGAAGUAGACAGAAUAAUGA ....((((((.((((......))))...)))-)))..............((((((......))))))....... ( -14.60, z-score = -0.55, R) >droSim1.chr4 885341 73 + 949497 UUACCAGAUGAGUUGAUCUAGCAAUGGGCGU-UUGUCCGAAUGCUGAAAUUUGUCGAAAUAGACAGAAUAAUUA ..........(((((...(((((.(((((..-..)))))..)))))...((((((......)))))).))))). ( -15.80, z-score = -1.36, R) >droSec1.super_40 201999 73 + 298270 UUACCAGAUGAGUUGAUCUAGCAAUGGGCGU-UUGUCCGAAUGCUGAAAUUUGUCGAAAUAGACAGAAUAAUUA ..........(((((...(((((.(((((..-..)))))..)))))...((((((......)))))).))))). ( -15.80, z-score = -1.36, R) >droVir3.scaffold_13052 1296281 57 - 2019633 AAAAUACAUCACACGUACCAAAAAUUUGUUUCUUAUACUGGUUCUUGAUAUUUUUGA----------------- .......((((.....((((..................))))...))))........----------------- ( -3.07, z-score = 1.02, R) >consensus UUACCAGAUGAGUUGAUCUAGCAAUGGGCGU_UUGUCCGAAUGCUGAAAUUUGUCGAAAUAGACAGAAUAAUUA ......((((((((....(((((..((((.....))))...))))).))))))))................... ( -7.40 = -8.02 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:55 2011