| Sequence ID | dm3.chr4 |
|---|---|
| Location | 1,126,166 – 1,126,229 |
| Length | 63 |
| Max. P | 0.889623 |
| Location | 1,126,166 – 1,126,229 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 93.65 |
| Shannon entropy | 0.08746 |
| G+C content | 0.32275 |
| Mean single sequence MFE | -11.60 |
| Consensus MFE | -10.70 |
| Energy contribution | -11.37 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889623 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 1126166 63 - 1351857 AUCUCUAAUUAUGACUUCAGUACUUAUACUUAAAGUUUUGGUGGCUCUACUAAGUCUUACAGG ............(((((.((((....((((.........))))....)))))))))....... ( -9.00, z-score = -0.20, R) >droSim1.chr4 864899 63 - 949497 AUCUAAAAUUAAGACUUCAGUACUCAUACUUAAACUUUUGGUGUCUCUACUAAGUCUUACAGG .........((((((((.((((...(((((.........)))))...)))))))))))).... ( -12.90, z-score = -2.67, R) >droSec1.super_40 170481 63 - 298270 AUCUAAAAUUAAGACUUCAGUACUCAUACUUAAACUUUUGGUGUCUCUACUAAGUCUUACAGG .........((((((((.((((...(((((.........)))))...)))))))))))).... ( -12.90, z-score = -2.67, R) >consensus AUCUAAAAUUAAGACUUCAGUACUCAUACUUAAACUUUUGGUGUCUCUACUAAGUCUUACAGG .........((((((((.((((...(((((.........)))))...)))))))))))).... (-10.70 = -11.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:54 2011