Locus 12423

Sequence ID dm3.chr4
Location 1,051,557 – 1,051,677
Length 120
Max. P 0.650893
window17074

overview

Window 4

Location 1,051,557 – 1,051,677
Length 120
Sequences 3
Columns 121
Reading direction reverse
Mean pairwise identity 67.46
Shannon entropy 0.42427
G+C content 0.36401
Mean single sequence MFE -18.77
Consensus MFE -8.76
Energy contribution -8.77
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.94
Structure conservation index 0.47
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.34
SVM RNA-class probability 0.650893
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr4 1051557 120 - 1351857
UAUUACUUUUGCUAAGCCCUUCCAUUUUAGCGAGAAACAGCUAUAAACAUUUCCUUCCUACCCAUCGCUA-AAAUCUAAUAGUUUAUCUAGGUUAGGGGUGUUUACGCUUACAAACACAUA
.......((((.(((((..........((((........))))(((((((..(...((((......((((-........)))).....))))...)..))))))).)))))))))...... ( -24.50, z-score =  -2.10, R)
>droSec1.super_40 93194 92 - 298270
UACCACUUUUGCUAAAGCCCUUCAGUUUAGCGAGCAACAGCUAUAAACAUUUCC-UAUUACCCAUCACUAAAAGCCAAAUAGGCUUAUAAAAA----------------------------
..........((....))......(((((...(((....))).)))))......-................(((((.....))))).......---------------------------- ( -13.10, z-score =  -1.17, R)
>droSim1.chr4 809343 96 - 949497
UACCACUUUUGCUAAAGCCCUUCAGUUUAGCGAGCAACAGCUAUAAACAUUUCC-UAUUACCCAUCACUAUAAGCCAAAUAGGCUUAUAAAAACGGA------------------------
..((....................(((((...(((....))).)))))......-.............((((((((.....)))))))).....)).------------------------ ( -18.70, z-score =  -2.56, R)
>consensus
UACCACUUUUGCUAAAGCCCUUCAGUUUAGCGAGCAACAGCUAUAAACAUUUCC_UAUUACCCAUCACUA_AAGCCAAAUAGGCUUAUAAAAA__G_________________________
.......(((((((((.........))))))))).....................................(((((.....)))))................................... ( -8.76 =  -8.77 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:53 2011