| Sequence ID | dm3.chr4 |
|---|---|
| Location | 994,414 – 994,528 |
| Length | 114 |
| Max. P | 0.508987 |
| Location | 994,414 – 994,528 |
|---|---|
| Length | 114 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 88.30 |
| Shannon entropy | 0.24785 |
| G+C content | 0.34653 |
| Mean single sequence MFE | -23.55 |
| Consensus MFE | -17.83 |
| Energy contribution | -17.72 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 994414 114 + 1351857 --AUCCGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA-CGG--CAGAUUGUUAACAAUCUGGCAGAUGUACUCAAACUUUCGAU --...((((((((.........((......))(((.((((((.(((((......))))).))))))......-.(.--(((((((....))))))).).......))).)))))))).. ( -27.40, z-score = -2.65, R) >droEre2.scaffold_4512 1002330 114 - 1286254 --AUCCGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA-CGG--CAGAUUGCUAACAAUCUGGCAGAUGUACUCAAACUUCCGAU --(((.((((.(((((((..((((......))))..((((((.(((((......))))).))))))......-.(.--(((((((....))))))).)...)))..)))).)))).))) ( -24.70, z-score = -1.68, R) >droYak2.chr4 1060154 114 + 1374474 --AUCCGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA-CGG--CAGAUUGUUAACAAUCUGGCAGAUGUACUCAAACUUUUGAU --...((((((((.........((......))(((.((((((.(((((......))))).))))))......-.(.--(((((((....))))))).).......))).)))))))).. ( -25.30, z-score = -2.02, R) >droSim1.chr4 771698 114 + 949497 --AUCCGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA-CGG--CAGAUUGUUAACAAUCUGGCAGAUGUACUCAAACUUUCGAU --...((((((((.........((......))(((.((((((.(((((......))))).))))))......-.(.--(((((((....))))))).).......))).)))))))).. ( -27.40, z-score = -2.65, R) >droSec1.super_40 36017 114 + 298270 --AUCCGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA-CGG--CAGAUUGUUAACAAUCUGGCAGAUGUACUCAAACUUUCGAU --...((((((((.........((......))(((.((((((.(((((......))))).))))))......-.(.--(((((((....))))))).).......))).)))))))).. ( -27.40, z-score = -2.65, R) >droPer1.super_106 30955 106 + 146283 --ACCAGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAAACAG--CAGAUUGUUAACAAUCUGGCAGAUGUACUUAG--------- --.(((((..(((((.(((.((((......))))..((((((.(((((......))))).))))))..........--....))))))))..))))).............--------- ( -20.50, z-score = -1.65, R) >droWil1.scaffold_181130 1255777 113 + 16660200 ----UGCAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUGGUAUUUAGAAAAAACAG--CAGAUUGUUAACAAUCUGGCAGAUGUACUUAACUAGUCAGA ----(((.((((((............(((.....)))......((((((.....(((((..............)))--))..)))))).)))))).)))..((.(((.....))))).. ( -19.34, z-score = 0.01, R) >droVir3.scaffold_13052 854225 116 + 2019633 CAACCAGAGGGUUGAACGAAUUACAAACCAGUGACGUAAAUAAUGACAAAAUUAUGUUAGUAUUAAGAAAAA-CAG--CAGAUUGUUAACAAUGUGGCAGAUGUACUUAGCAAGUUAGU (((((....))))).(((..((((......))))))).((((.(((((......))))).))))......((-(..--((.((((....)))).)).....(((.....))).)))... ( -16.80, z-score = 0.46, R) >droMoj3.scaffold_6498 2044457 118 - 3408170 CCACCAGAGGGUUGAACGAAUUACAAGCCAGUGACGUAAAUAAUGACAAAAUUAUGUUAGUGUUUGAAAAAA-CAGACCAGAUUGCCAACAAUGUGGCAGAUGUACUUAGUUAGUCAGC ((......))(((((...((((((((((.(.((((((((............)))))))).)))))).....(-((..(((.((((....)))).)))....)))...)))))..))))) ( -23.70, z-score = -0.78, R) >droGri2.scaffold_14822 975646 116 - 1097346 CCGCCAGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA-CAG--CAGAUUGUUAACAAUCUGCCAGAUGUACUUAGUUAGUCAGU .........(..(((...((.((((.....((....((((((.(((((......))))).)))))).....)-).(--(((((((....))))))))....)))).))..)))..)... ( -23.00, z-score = -1.37, R) >consensus __AUCCGAGGGUUGAACGAAUUACAAACCAGUGAGGUAAAUAAUGACAAAAUUAUGUUAGUAUUUAGAAAAA_CAG__CAGAUUGUUAACAAUCUGGCAGAUGUACUCAAACUUUCGAU .........((((............))))..((((.((((((.(((((......))))).))))))............(((((((....))))))).........)))).......... (-17.83 = -17.72 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:46 2011