| Sequence ID | dm3.chr4 |
|---|---|
| Location | 906,258 – 906,308 |
| Length | 50 |
| Max. P | 0.969187 |
| Location | 906,258 – 906,308 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 86.67 |
| Shannon entropy | 0.18366 |
| G+C content | 0.48000 |
| Mean single sequence MFE | -15.13 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.83 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 906258 50 - 1351857 ACUAAGGCAGUGGCAGAUCCAGGAGUACGUUCAGCGGAUUUGCAAUCAAA ............((((((((..(((....)))...))))))))....... ( -12.50, z-score = -1.56, R) >droSec1.super_30 612697 50 - 664411 ACUAAGACAGUGGCAGAUCCAGGAGUACGUUCAGCGGAUUUGCCAUCAGA .........(((((((((((..(((....)))...))))))))))).... ( -17.50, z-score = -3.51, R) >droEre2.scaffold_4512 920153 50 + 1286254 ACUAAGACAGUCGCAGAUCCAGCAGUAAGUUUAGCGGAUUUGCAGACCAA .........(((((((((((.((..........)))))))))).)))... ( -15.40, z-score = -4.11, R) >consensus ACUAAGACAGUGGCAGAUCCAGGAGUACGUUCAGCGGAUUUGCAAUCAAA ............((((((((..(((....)))...))))))))....... (-10.50 = -10.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:41 2011