| Sequence ID | dm3.chr4 |
|---|---|
| Location | 854,822 – 854,958 |
| Length | 136 |
| Max. P | 0.678462 |
| Location | 854,822 – 854,958 |
|---|---|
| Length | 136 |
| Sequences | 3 |
| Columns | 136 |
| Reading direction | forward |
| Mean pairwise identity | 97.06 |
| Shannon entropy | 0.04051 |
| G+C content | 0.45588 |
| Mean single sequence MFE | -39.78 |
| Consensus MFE | -37.77 |
| Energy contribution | -38.00 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 854822 136 + 1351857 GAUCUUAAGGCAGAACACCCUGAGAAUCCAUUGUGUACAACUUGUGUGUGCAACCAAAUCUUUGCAAUCGGUGCAUUGCAGGCUUUGAGUCAAAAGUCAUUCUGUUCCGACUCAAAGUCGUGUGGUCUUAUGCAGC .....((((((...((((...((((.....(((..((((.....))))..))).....))))((((((......))))))(((((((((((...((.....)).....))))))))))))))).))))))...... ( -39.10, z-score = -1.36, R) >droSim1.chr4 663648 136 + 949497 GAUCUUAAGGCAGCACACCCUGAGAAUCCGUUGUGUACAACUUGUGUGUGCAACCAAAUCUUUGCGAUCGGUGCAUUGCGGGCUUUGAGUCAAAAGUCAUUUUGUUCCGACUCAAAGUCGUUUGGUCUUAUGCAGC .........(((((((((.....(....)((((....))))....)))))).((((((((((((.(.((((.(((.....((((((......))))))....))).))))).)))))..)))))))....)))... ( -39.60, z-score = -1.12, R) >droSec1.super_30 562563 136 + 664411 GAUCUUAAGGCAGAACACCCUGAGAAUCCGUUGUGUACAACUUGUGUGUGCAACCAAAUCUUUGCAAUCGGUGCAUUGCGGGCUUUGAGUCAAAAGUCAUUUUGUUCCGACUCAAAGUCGUGUGGUCUUAUGCAGC .....((((((...((((...((((....((((..((((.....))))..))))....))))((((((......))))))(((((((((((.................))))))))))))))).))))))...... ( -40.63, z-score = -1.57, R) >consensus GAUCUUAAGGCAGAACACCCUGAGAAUCCGUUGUGUACAACUUGUGUGUGCAACCAAAUCUUUGCAAUCGGUGCAUUGCGGGCUUUGAGUCAAAAGUCAUUUUGUUCCGACUCAAAGUCGUGUGGUCUUAUGCAGC .....((((((...((((...((((....((((..((((.....))))..))))....))))((((((......))))))(((((((((((.................))))))))))))))).))))))...... (-37.77 = -38.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:41 2011