| Sequence ID | dm3.chr4 |
|---|---|
| Location | 823,478 – 823,596 |
| Length | 118 |
| Max. P | 0.857616 |
| Location | 823,478 – 823,596 |
|---|---|
| Length | 118 |
| Sequences | 9 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 76.72 |
| Shannon entropy | 0.46200 |
| G+C content | 0.52970 |
| Mean single sequence MFE | -40.90 |
| Consensus MFE | -21.97 |
| Energy contribution | -22.89 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 823478 118 - 1351857 CCUAUGUGGUCCACUGCGGCUGUGGCAGCUGCGCACAUUCAAGCAGCUCUGGCGGCUGCGGCAGUAGCAGCUGCCAACAAUAACAAAAAUAGCAGCCAUUUUUCGAACAACACUAAUA----- .....(..(....)..)((((((((.((((((..........))))))))(((((((((.......)))))))))................)))))).....................----- ( -42.80, z-score = -1.63, R) >droSim1.chr4 635903 118 - 949497 CCUAUGUGGUCCACUGCGGCUGUGGCAGCUGCGCACAUUCAAGCAGCUCUGGCGGCUGCAGCAGUAGCAGCUGCCAACAAUAACAAAAACAGCAGCCAUUAUUCGAACAACACUAAUA----- .....(..(....)..)((((((((.((((((..........))))))))(((((((((.......)))))))))................)))))).....................----- ( -42.10, z-score = -1.56, R) >droSec1.super_30 529948 118 - 664411 CCUAUGUGGUCCACUGCGGCUGUGGCAGCUGCGCACAUCCAAGCAGCUCUGGCGGCUGCAGCAGUAGCAGCUGCCAACAAUAACAAAAACAGCAGCCAUUAUUCGAACAACACUAAUA----- .....(..(....)..)((((((((.((((((..........))))))))(((((((((.......)))))))))................)))))).....................----- ( -42.10, z-score = -1.51, R) >droYak2.chr4 888567 118 - 1374474 CCUGUGUGGUCCACUGCGGCUGUGGCAGCUGCGCACAUUCAAGCAGCUCUGGCGGCUGCAGCAGUAGCAGCUGCCAACAAUAGCAAAAACAGAAACCGUUUUUCGAACAACACUAAUA----- ...((((..((....((((((((.((((((((..........)))))).((((((((((.......))))))))))......))....))))...)))).....))...)))).....----- ( -44.00, z-score = -1.64, R) >droEre2.scaffold_4512 841954 118 + 1286254 CCUAUGUGGUCCACUGCGGCUGUGGCAGCUGCGCACAUUCAAGCAGCUCUGGCGGCUGCAGCAGUAGCAGCUGCCAACAAUAACAAAAACAGCAACCGUUUUUCGAACAACACUAAUA----- .....(((.((....((((.(((((.((((((..........))))))))(((((((((.......)))))))))................))).)))).....))....))).....----- ( -39.20, z-score = -0.88, R) >droAna3.scaffold_13767 224144 115 + 1685616 CCUAUUUGGUCCACUGCGGCGGUGGCGGCUGCGCAUAUACAAGCCGCACUGGCAGCAGCAGCAGUUGCCGCCGCCAAUAGCAAUAAAAACAACA-CAGUUUUU--AGCAAUAAUAAUC----- ((.....)).....((((((((((((((((((((........(((.....)))....)).)))))))))))))))........(((((((....-..))))))--)))).........----- ( -43.80, z-score = -2.86, R) >dp4.Unknown_group_43 9864 109 + 90946 CCAAUGUGGCCGACAGCUGCGGUCGCGGCGGCACACAUUCAGGCCGCUUUGGCGGCAGCAGCAGUGGCCGCUUCCAAUAAUAAUAACCACAG---------UUCUAGCAACAAUAAUC----- .....(((((((...(((((.(((((((((((.(.......)))))))...))))).)))))..))))))).....................---------.................----- ( -41.00, z-score = -2.51, R) >droPer1.super_103 8392 109 + 157294 CCAAUGUGGCCGACAGCUGCGGUCGCGGCGGCACACAUUCAGGCCGCUUUGGCGGCAGCAGCAGUGGCCGCUUCCAAUAAUAAUAACCACAG---------UUCUAGCAACAAUAAUC----- .....(((((((...(((((.(((((((((((.(.......)))))))...))))).)))))..))))))).....................---------.................----- ( -41.00, z-score = -2.51, R) >droWil1.scaffold_181130 1728479 105 - 16660200 CCUAUGUGGCCGACUGCGG---UAGCUGCCGCCCAUAUCCAG---GCUCUGGCUGCUGCGGUAGCGGCAACCAAUAACAAUAACAGCUGCAA------------UAACAACAACAAUCUGAUG ....((..((.((((((((---((((((..(((........)---))..))))))))))))).(.(....))...........).))..)).------------................... ( -32.10, z-score = -0.66, R) >consensus CCUAUGUGGUCCACUGCGGCUGUGGCAGCUGCGCACAUUCAAGCAGCUCUGGCGGCUGCAGCAGUAGCAGCUGCCAACAAUAACAAAAACAGCA_CC_UUUUUCGAACAACACUAAUA_____ .....((((((.(((((.((.((.((((((((..........))))))...)).)).)).))))).)..)))))................................................. (-21.97 = -22.89 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:35 2011