| Sequence ID | dm3.chr4 |
|---|---|
| Location | 820,664 – 820,737 |
| Length | 73 |
| Max. P | 0.834933 |
| Location | 820,664 – 820,737 |
|---|---|
| Length | 73 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 63.22 |
| Shannon entropy | 0.56705 |
| G+C content | 0.37140 |
| Mean single sequence MFE | -14.48 |
| Consensus MFE | -6.14 |
| Energy contribution | -6.01 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 820664 73 + 1351857 AAAAAUAAAUACAUAACGGUGGAAGACCAAUUUGGCUGGCCGAAGGUUUACGAAGAUUCCACUGUUUUCGGUC ..........((..((((((((((((((..(((((....)))))))))........))))))))))....)). ( -19.10, z-score = -1.86, R) >droSim1.chr4 632920 63 + 949497 AAAAAAAAAUACAUAAUGGUGGUGGGCCAAUU----------AAGGCUUACGAAGUUUCCACUGUGUCUGGUC ..........(((((.((((.(((((((....----------..))))))).).....))).)))))...... ( -15.30, z-score = -1.84, R) >droSec1.super_30 526957 63 + 664411 AAAAAAAAAUACAUAAUGGUGGUAGGCCAAUU----------AAGGCUUACGAAGUUUCCACUGUGUCUGGUC ..........(((((.((((.(((((((....----------..))))))).).....))).)))))...... ( -15.70, z-score = -2.32, R) >droAna3.scaffold_13272 249660 64 - 529493 ---AAAAUAAAAAAAAUUGCUUUCCAGCAAUUAGG------GAAUAUGUAUGUAGAAGACACACUACUAGAAC ---...........(((((((....)))))))...------..........((((........))))...... ( -7.80, z-score = -0.88, R) >consensus AAAAAAAAAUACAUAAUGGUGGUAGACCAAUU__________AAGGCUUACGAAGAUUCCACUGUGUCUGGUC ...............(((((((((((((................))))))........)))))))........ ( -6.14 = -6.01 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:34 2011