| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,401,187 – 9,401,288 |
| Length | 101 |
| Max. P | 0.615921 |
| Location | 9,401,187 – 9,401,288 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 73.16 |
| Shannon entropy | 0.51443 |
| G+C content | 0.42914 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.94 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9401187 101 - 23011544 ---AAACAAAAACUAAAAA--UUAAAAAC-----AAAAACCGCCAC--UUUAACCCUUUUGGGUGUCGAGGUGUGAGAUUU-AGUGACACUUUAGCUGGCGGGUAUCUUUCGAG ---................--........-----.....((((((.--....((((....))))((..((((((.(.....-..).))))))..))))))))............ ( -25.60, z-score = -1.91, R) >droPer1.super_5 4307362 91 - 6813705 ----------GGGGAACAGCCCACAAA-------AAAUUGGGCCACUUUUUAACCCUUUCGGGUGUCGAGGUGUGAGAUUCGGGUGACACUUUCUCU----UGUCUCACCCG-- ----------(((((((((((((....-------....)))))((((((...((((....))))...)))))).((((....(....)....)))).----))).)).))).-- ( -33.00, z-score = -2.05, R) >dp4.chr4_group1 4375129 91 + 5278887 ----------AGGGAACAGCCCACAAA-------AAAUUGGGCCACUUUUUAACCCUUUUGGGUGUCGAGGUGUGAGAUUCGGGUGACACUUUCUCU----UGUCUCACCCG-- ----------.(((....(((((....-------....)))))((((((...((((....))))...))))))((((((..(((.........))).----.))))))))).-- ( -33.00, z-score = -2.33, R) >droAna3.scaffold_12943 752685 113 - 5039921 CAGAGAAGACAAGAAAAAAUACGAAUACCGCCGAAAAAAUGGGCUCUUUUUAACCCUUUGGGGUGUCGAGGUGUGAGAUUU-UGUGACACUUUGGCUGACGAGAAUCCUUUAGG ....((((.....................(((.(.....).)))((((.(((((((....))))((((((((((.(.....-..).))))))))))))).))))...))))... ( -25.40, z-score = -0.00, R) >droEre2.scaffold_4929 10010527 97 - 26641161 ---------AUACAAAAAAUCAAAAAACA-----AAAAACCGCCAC--UUUAACCCUUUUGGGUGUCGAGGUGCGAGAUUU-AGUGACACUUUAGCUGGCGGCUAUCUUUCGAG ---------....................-----.....((((((.--....((((....))))((..(((((((......-..)).)))))..))))))))............ ( -23.50, z-score = -1.55, R) >droYak2.chr2L 12072371 102 - 22324452 ---AUACAAAAAACAAAAGG-AAAAAACC-----GAAAACCGCCAC--UUUAACCCUUUUGGGUGUCGAGGUGUGAGAUUU-AGUGACACUUUGGCUGGCGGGUAUCUUUCGAG ---.................-.......(-----((((.((((((.--....((((....))))((((((((((.(.....-..).)))))))))))))))).....))))).. ( -31.90, z-score = -2.69, R) >droSec1.super_3 4854971 100 - 7220098 ---AUACAAAAACAAAAAA--UAAAAAAC-----AAAAACCG-CAC--UUUAACCCUUUUGGGUGUCGAGGUGUGAGAUUU-AGUGACACUUUAGCUGGCGGGUAUCUUUCGAG ---................--........-----.....(((-(..--....((((....))))((..((((((.(.....-..).))))))..))..))))............ ( -21.80, z-score = -1.00, R) >droSim1.chr2L 9177266 103 - 22036055 ---AUACAAAAACAAAAAAAUUAAAAAAC-----AAAAACCGCCAC--UUUAACCCUUUUGGGUGUCGAGGUGUGAGAUUU-AGUGACACUUUAGCUGGCGGGUAUCUUUCGAG ---..........................-----.....((((((.--....((((....))))((..((((((.(.....-..).))))))..))))))))............ ( -25.60, z-score = -1.98, R) >consensus ___A_ACAAAAACAAAAAA__CAAAAAAC_____AAAAACCGCCAC__UUUAACCCUUUUGGGUGUCGAGGUGUGAGAUUU_AGUGACACUUUAGCUGGCGGGUAUCUUUCGAG ....................................................((((....))))((.(((((((.(........).))))))).)).................. (-11.56 = -11.94 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:13 2011