| Sequence ID | dm3.chr4 |
|---|---|
| Location | 817,323 – 817,380 |
| Length | 57 |
| Max. P | 0.927926 |
| Location | 817,323 – 817,380 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 87.89 |
| Shannon entropy | 0.21192 |
| G+C content | 0.57616 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.20 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr4 817323 57 - 1351857 UUUGUGGCGCCCAGACUGAAGCCCGGUCUGGCAUCACGGCGAAAACAGGUACUAACG .(((((..(((.((((((.....)))))))))..))))).................. ( -18.10, z-score = -1.09, R) >droSim1.chr2h_random 2494654 57 + 3178526 UUUGUGGCGCCCAGACUGAAGCCCGGUCUGGCAUCACGGCGAAAACAGGUACUAACG .(((((..(((.((((((.....)))))))))..))))).................. ( -18.10, z-score = -1.09, R) >droSec1.super_0 20531221 52 + 21120651 GCUGUGGCGCCCAGACUGAAGCCCGGUCUGGCAUCACGGCGAAAACAAGUAC----- ((((((..(((.((((((.....)))))))))..))))))............----- ( -24.60, z-score = -3.76, R) >droYak2.chr2R 720304 57 - 21139217 UCUGUGGCGCCCAGACUAAAGCCCAGUCUGGCAACACGGCGUAAACAAGUACUAACG .(((((..(((.(((((.......))))))))..))))).................. ( -16.40, z-score = -1.51, R) >droEre2.scaffold_4929 21980542 55 - 26641161 --UGUGGCGCCCAGACUAAAGCCCAGUCUGGCAACACGGCGUAAGCAAGUACUAACG --.(((..(((.(((((.......))))))))..))).((....))........... ( -17.80, z-score = -1.53, R) >consensus UCUGUGGCGCCCAGACUGAAGCCCGGUCUGGCAUCACGGCGAAAACAAGUACUAACG .(((((..(((.((((((.....)))))))))..))))).................. (-17.00 = -17.20 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:01:33 2011